PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01239.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 363aa    MW: 40474 Da    PI: 6.4014
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01239.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-281567153
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
                kprl+WtpeLH+rF+ea +qLGG++kAtPk+++++m+++gLtl+h+kSHLQ +
  KHN01239.1 15 KPRLKWTPELHRRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQAF 67
                79*************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-261366IPR009057Homeodomain-like
SuperFamilySSF466893.76E-141468IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-191567IPR006447Myb domain, plants
PfamPF002491.6E-51765IPR001005SANT/Myb domain
PfamPF143797.1E-23132178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDPQSMHFVL STDSKPRLKW TPELHRRFIE ATNQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQAFIPL LICDFFLFLC LWLQKYRLGK SQELETCSDN KQEDYIETKS SSDGHCSREI  120
SIGAQNQLTE NMQIAQALQM QMEVQRKLHE QIEVQKHLQL RIEAQGKYLQ SVLKKAQEAL  180
AGYNSSPVGI ELTKAELSQL VTIINNACPS SPISELTETR GLSLSCGERK RDRGTMCSLE  240
SSLTSSESSG RKEEKQPMEE IVEFKSSINV SLQLPLMEIL TEDKASNGGS SNEASGRKRS  300
ATAAESDDGS CVVEQPCGKR CGNKLRKAKL SEMLDLNSQC QSDMDSTSSK TLDLNCSLNF  360
WEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-181567153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-181567153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-181567153Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-181567153Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517998.20.0myb family transcription factor PHL8 isoform X2
RefseqXP_028230856.10.0myb family transcription factor PHL8-like isoform X1
SwissprotF4I2742e-74PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A445LYX70.0A0A445LYX7_GLYSO; Myb family transcription factor PHL8
TrEMBLK7K1V40.0K7K1V4_SOYBN; Uncharacterized protein
STRINGGLYMA01G05920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.13e-74G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]