PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN00881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 31495.5 Da PI: 7.5498 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+++v+ +G g+W+ +++ g++R +k+c++rw++yl KHN00881.1 16 RGPWSAEEDQILINYVQVHGEGNWRELSKRAGLKRLGKSCRLRWLNYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++ +lG++ W++Ia +++ gRt+ ++k++w++yl KHN00881.1 69 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDHEIKNYWNTYL 114 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.484 | 11 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 15 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.296 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.12E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MKRKGRSCDN QDAVNRGPWS AEEDQILINY VQVHGEGNWR ELSKRAGLKR LGKSCRLRWL 60 NYLKPDIKRG NISSDEEDLI IRLHSLLGNR WSLIAGRLPG RTDHEIKNYW NTYLRKKVEQ 120 NHNYNNLPGH NNIPIKLRIE SPRCSKNSLG IVIDPTKSSH PVTIKSMSCT EVMMPTRTVN 180 DFTTSWDKNP FASTPQDGHG HCSEGFLKHF DISDVLMPYE DCRFNEYACV EVPQHFGDEA 240 YKVIDAVGET RYDNWKIDDY FPLDYDVGFS LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN00881.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB029270 | 3e-61 | AB029270.1 Glycine max mRNA for GmMYB13, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028221498.1 | 0.0 | myb-related protein 305-like | ||||
TrEMBL | A0A445F743 | 0.0 | A0A445F743_GLYSO; Transcription repressor MYB5 | ||||
STRING | GLYMA20G32510.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15511 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-55 | myb domain protein 5 |
Publications ? help Back to Top | |||
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