PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99530.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 484aa    MW: 53196.6 Da    PI: 7.2341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99530.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30264321258
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                 +Dg++WrKYGqK+ kg+++prsYYrC++   C+v+k+v+rsaed++v+++tYeg+Hnh
  KHM99530.1 264 SDGCQWRKYGQKMAKGNPCPRSYYRCSMGtACTVRKQVQRSAEDQSVLITTYEGQHNH 321
                 7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31248321IPR003657WRKY domain
SuperFamilySSF1182903.4E-26256321IPR003657WRKY domain
PROSITE profilePS5081127.692258324IPR003657WRKY domain
SMARTSM007742.1E-35263323IPR003657WRKY domain
PfamPF031063.3E-26265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MYKKLTSKME ATCNDISNVA VTQSSPTMSF NGKRLVVDEI DFFAEKKKKK SEVDDQMVHH  60
QMELPNTSLD LLITNSTSTS NRSNMEEEPS KAKDNTRNKF VAMLSELQQM NAENRRLREL  120
VHNLNNKYNA LHKDLMKLTH KQHENEINGA IKENDKRDDM IIPRSLLDIG IATKEDPSQQ  180
HYSERKLQES KNIIDKLDSG KDSEKSMVDQ HESPADHKAL WGWISTEATR LSSLRDVDQA  240
SETMSMIKKA RVSVRARTDS SMISDGCQWR KYGQKMAKGN PCPRSYYRCS MGTACTVRKQ  300
VQRSAEDQSV LITTYEGQHN HVLSPTARAM ASTTSAAASM LLSGSMLSSD GLIHPNILES  360
TAALSCSQNT ATLSASAPFP TITLDLTQSA TNNSSQLLQG APQDNQHSLL SPVLAQKFMS  420
SATNIFDQGT ETASFVDTVN AATAAITADP KFSAALMAAV TSIIGSSHSN INGTSGDIQH  480
GNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22250325175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357440.0AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246938.10.0WRKY transcription factor 6-like
TrEMBLA0A445JMY10.0A0A445JMY1_GLYSO; WRKY transcription factor 6
STRINGGLYMA08G43258.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-74WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]