PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42389.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 749aa    MW: 83720.3 Da    PI: 6.5601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42389.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-21104159156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  KFK42389.1 104 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 159
                 7999************************************************9877 PP
2START2306.5e-722614881206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 e+a++a+ el+k+a+++ep+W +s+    e++n+de+l++f+++++      +s+ea+r+sg+v+m++++l + ++d++ qW+e++a    ka+t++vi
  KFK42389.1 261 EIANRATLELQKMATSGEPLWLRSVetgrEILNYDEYLKEFPQAQAssmhgrKSIEASRDSGIVFMDAHKLAQCFMDVG-QWKEMFAclisKAATVDVI 358
                 578999**************************************99*********************************.******************* PP

                 CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 ++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++++++ e ++s+ +++++pSg++ie++snghskvtwveh dl+++
  KFK42389.1 359 RQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSVDDNNAEkEASLLKCRKRPSGCIIEDTSNGHSKVTWVEHLDLSAS 457
                 ************************************************************99************************************* PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                 +++ l+rs+v++gla+ga++wvatlq +ce+
  KFK42389.1 458 TVQPLFRSFVNTGLAFGARHWVATLQLHCER 488
                 *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-2289155IPR009057Homeodomain-like
SuperFamilySSF466897.52E-2095162IPR009057Homeodomain-like
PROSITE profilePS5007117.815101161IPR001356Homeobox domain
SMARTSM003899.6E-18103165IPR001356Homeobox domain
PfamPF000462.7E-18104159IPR001356Homeobox domain
CDDcd000861.71E-17104159No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084843.03252491IPR002913START domain
SuperFamilySSF559611.79E-31255488No hitNo description
CDDcd088751.09E-109256487No hitNo description
SMARTSM002343.0E-82261488IPR002913START domain
PfamPF018522.4E-65261488IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-8310487IPR023393START-like domain
SuperFamilySSF559612.47E-15517738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVL AEDEDRTVEM  60
SSENSGPTTR SRSEEDLEGE DLMEEEEEEE EDGSGNKVGN KRKRKKYHRH TTDQIRHMEA  120
LFKETPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KAELEKLREE  180
NKAMRESFSK ANPSCPNCGG GTDDVHLENS KLKAELDKLR AALGRTPYPL QASSSDDQEH  240
RLGSHDLYTG FFALEKSRIA EIANRATLEL QKMATSGEPL WLRSVETGRE ILNYDEYLKE  300
FPQAQASSMH GRKSIEASRD SGIVFMDAHK LAQCFMDVGQ WKEMFACLIS KAATVDVIRQ  360
GEGPSRIDGA IQLMFGEMQL LTPVVPTREV YFVRSCRQLS PEKWAIVDVS VSVDDNNAEK  420
EASLLKCRKR PSGCIIEDTS NGHSKVTWVE HLDLSASTVQ PLFRSFVNTG LAFGARHWVA  480
TLQLHCERLV FFMATNVPTK DSLGVTTLAG RKSVLKMAQR MTQSFYRAIA ASSYHQWTKI  540
TTKTGQDMRV SSRKNIHDPG EPTGVIVCAS SSLWLPVSNT ILFDFFRDEA RRHEWDTLSN  600
GAHVQSIASL SKGQDRGNSV SIQTVKSREK SIWVLQDSCT NSYESVVVYA PVDINTTQLV  660
IAGHDPSNIQ ILPSGFSIIP DGVESRPLVI TSTQDDRNTQ GGSLLTLALQ TLINPSPAAK  720
LNMESVESVT NLVSVTLQNI KRSLQIEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42389.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602940.0AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
GenBankBT0019560.0BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565223.10.0HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A087HJT70.0A0A087HJT7_ARAAL; Uncharacterized protein
STRINGA0A087HJT70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]