PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41315.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 357aa MW: 39325.9 Da PI: 5.4165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41315.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.9e-14	168	214	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L KFK41315.1 168 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 214 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	168	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	169	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	169	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.23E-5	178	217	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.6E-4	254	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MCAKKEEEED SSGAMNNIQN YQNDLFFHQL ISHHHDPSQP EAFGPSGNDG SGFTIFSQDS 60 VSPIWSLPQP SSSMQPPFDS FPPPPSSPAS FYGSFFNRSR AHHQGLQFGY EGFGGAMSAS 120 HHHEQLRILS EALGPVVQAG SGPFGLQAEL GKMSAQEIMD AKALAASKSH SEAERRRRER 180 INNHLAKLRS ILPNTTKTDK ASLLAEVIQH VKELKRETSV ISETNLVPTE SDELTVAFTE 240 EEETGDGRFV IKASLCCEDR SDLLPDMIKT LKAMRLKTLK AEITTVGGRV KNVLFVTGEE 300 NSGEEVEEEC CIGTIEEALK AVMEKNNVEE TSSSGNAKRQ RMSSHNTITI VEQQHHM

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MCAKKEEEED SSGAMNNIQN YQNDLFFHQL ISHHHDPSQP EAFGPSGNDG SGFTIFSQDS  60
VSPIWSLPQP SSSMQPPFDS FPPPPSSPAS FYGSFFNRSR AHHQGLQFGY EGFGGAMSAS  120
HHHEQLRILS EALGPVVQAG SGPFGLQAEL GKMSAQEIMD AKALAASKSH SEAERRRRER  180
INNHLAKLRS ILPNTTKTDK ASLLAEVIQH VKELKRETSV ISETNLVPTE SDELTVAFTE  240
EEETGDGRFV IKASLCCEDR SDLLPDMIKT LKAMRLKTLK AEITTVGGRV KNVLFVTGEE  300
NSGEEVEEEC CIGTIEEALK AVMEKNNVEE TSSSGNAKRQ RMSSHNTITI VEQQHHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41315.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891060.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A087HGR3	0.0	A0A087HGR3_ARAAL; Uncharacterized protein
STRING	A0A087HGR3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-180	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]