PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39406.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 363aa    MW: 41413.8 Da    PI: 6.8876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39406.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05203222120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  KFK39406.1 203 FSCPLCFKTFNRYNNMQMHM 222
                 89*****************9 PP
2zf-C2H212.90.00033287309123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk F  k + ++H +++
  KFK39406.1 287 FACRRCGKAFAVKGDWRTHEKNC 309
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5203222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66203230IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-6273307No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5274307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSDPACSFNN GYVADYHDYN FNNSTSLSHL YNSHGTFYYP HHTTNPNLTS PDSPPLREAL  60
PLLSLSPIHK HEEPIVHPHH EYYFMDMTET SNLKFLDHDL NQCQETTHYH DVTVDLHLGL  120
PNLGGDAISN GGGRSSSSDV ILDSTEDQEH HHEHHQDQGV EVTLASHDDH GHGGVQKGDH  180
HHHIHHHYWI PTPSQILMGP TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ  240
PTAMLRMPCY CCAPGCKNNI DHPRARPLKD FRTLQTHYKR KHGVRPFACR RCGKAFAVKG  300
DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH VKAFGNGHVP CFGIDCFGDH EDEEAASDVE  360
QQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145538.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A087HBA40.0A0A087HBA4_ARAAL; Uncharacterized protein
STRINGA0A087HBA40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]