PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38757.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 509aa    MW: 57169.2 Da    PI: 5.0216
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38757.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.45.7e-831455092374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL  cA a+++++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++s    +++ ++ + ++ +++   ++l  f+evsP++ + + +aN+
  KFK38757.1 145 EQLLNPCAMAITANNSSRVQHYLCVLSELASSSGDANHRLAAFGLRALQHHLSSS----SSSWHVVNFASAEVKMFQKSLLKFYEVSPWFALPNNMANS 239
                 689**************************************************93....33334444443346666666667***************** PP

        GRAS 101 aIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 aIl+ + +e     + +H++D+++s+G+QWp+Ll+aL++Rpegpp ++RiT v++++ +          ++g++L  fA++l+++++ +v+        
  KFK38757.1 240 AILQILTQEpkddkKVLHVLDIGVSHGMQWPTLLEALSCRPEGPPtRVRITIVSNQTGDipfsVGPPAYNYGSQLIGFARSLNINLQVSVV-------D 331
                 *******9999985556************************998889********7777999888999*********************96.......4 PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 +++ ++++p+E+l+V+ +++lh+l    +s+++er+evL +++sl+Pk vv++e++ d  ++++F++rf+++ley+++++ds+++++    ee+++ Er
  KFK38757.1 332 KFQLIDTSPHESLIVCTQFRLHQLK---HSVPDERSEVLVALRSLKPKGVVLCENNGDSiSNGDFAARFSKKLEYMWKFLDSTSSGF---IEEKNSEER 424
                 56888*******************8...77778889**********************99***********************9886...7899999** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  l++ e+++v+++ g+     +e + +W er+ +aGF + +++e+a + ak+llrk++ +++ ++ e++++++ l+Wk++++ ++S W+
  KFK38757.1 425 NLMEGEATKVLMNGGEI---LNEGKDQWYERMIKAGFVAQAFREDAIDGAKSLLRKYDnNWEISM-EDENTFCgLMWKGEAVSFCSLWK 509
                 ***************98...89999*********************************4444444.55556666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.475118488IPR005202Transcription factor GRAS
PfamPF035142.0E-80145509IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSLEETEPQN QTLDHVLGWL EDSMSLNPLL GFDDPYLLQE FDGSQTWEWD QTQDPELGFL  60
HTYSEDLNTY LGCEATNLEV VTGAPVTGSD PPPEAQQSND QSKKRNRDGL NEAQKVKRSA  120
RSKRNANKSS EKSFKDGNKE ERWAEQLLNP CAMAITANNS SRVQHYLCVL SELASSSGDA  180
NHRLAAFGLR ALQHHLSSSS SSWHVVNFAS AEVKMFQKSL LKFYEVSPWF ALPNNMANSA  240
ILQILTQEPK DDKKVLHVLD IGVSHGMQWP TLLEALSCRP EGPPTRVRIT IVSNQTGDIP  300
FSVGPPAYNY GSQLIGFARS LNINLQVSVV DKFQLIDTSP HESLIVCTQF RLHQLKHSVP  360
DERSEVLVAL RSLKPKGVVL CENNGDSISN GDFAARFSKK LEYMWKFLDS TSSGFIEEKN  420
SEERNLMEGE ATKVLMNGGE ILNEGKDQWY ERMIKAGFVA QAFREDAIDG AKSLLRKYDN  480
NWEISMEDEN TFCGLMWKGE AVSFCSLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3213650979473Protein SHORT-ROOT
5b3h_B2e-3213650925419Protein SHORT-ROOT
5b3h_E2e-3213650925419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884991.10.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLA0A087H9F50.0A0A087H9F5_ARAAL; Uncharacterized protein
STRINGA0A087H9F50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein