PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35545.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

G2-like

Protein Properties

Length: 328aa MW: 37246.7 Da PI: 5.3452

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35545.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3e-31	154	208	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW++eLHe+F+eav++L G+ekAtPk++++lm+v+gLt+++vkSHLQkYRl KFK35545.1 154 KPRMRWNTELHECFLEAVKKLEGPEKATPKAVMKLMNVEGLTIYQVKSHLQKYRL 208 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.484	151	211	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-29	153	209	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-17	153	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	154	209	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	156	207	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	244	290	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEASMNSHNF LNIQETRNFP FSRSSAFCNL SSSSSSETQK HLGTTLPFLP NPFTERSPSE 60 DLLRNLYNGE EEDSSLITLS GDACSDLNEN FSLSEQMEFQ FLSDELELAI TDRVETPRLD 120 EIYQVTESSP DQNCVPVVMP VLSQSSSGSE VNHKPRMRWN TELHECFLEA VKKLEGPEKA 180 TPKAVMKLMN VEGLTIYQVK SHLQKYRLAK YMPARKEGKA NGNSEDKKPA SNTSDVDGRN 240 KGAIQLTESL RMQMEVQKQL HEQLEVQRSL QLRIEEHAKY LEKILDEQRK ATSKKVSQFP 300 SSPAKKISSE AKDDDECETS PKRPRLEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35545.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013710505.1	1e-144	myb family transcription factor PHL6
Swissprot	Q949U2	1e-118	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A087H093	0.0	A0A087H093_ARAAL; Uncharacterized protein
STRING	A0A087H093	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-112	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]