PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30156.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 249aa    MW: 27934.9 Da    PI: 6.5745
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30156.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.7e-372682460
      zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                 +++cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GGalrn+P+Gg++r+ k+
  KFK30156.1 26 PTRACPRCKSENTKFCYYNNYSVSQPRYFCKNCRRYWTHGGALRNIPIGGSCRRAKR 82
                5689**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-252582IPR003851Zinc finger, Dof-type
PfamPF027014.4E-322882IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7142882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENLNVVVNE GDEVNEGDEV NEEKPPTRAC PRCKSENTKF CYYNNYSVSQ PRYFCKNCRR  60
YWTHGGALRN IPIGGSCRRA KRPRIEPSSV SQVVSLEIHE QVTHHQPFLH VQETNEFLGS  120
FGGSAVVVGN CLGSLPEIHP DMVTNVTPIR SLRPMETLDF SDGSFRHDYF DVGSNDLMGN  180
PLINQSFGGS HVDNHNRWNQ SINNTLNMNS IAGGSTASSS NTEMNRNNNM IINNCFIRSS  240
SYHLEQHGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413831.11e-90dof zinc finger protein DOF4.4
SwissprotQ9SUA91e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A087GJV40.0A0A087GJV4_ARAAL; Uncharacterized protein
STRINGA0A087GJV40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.15e-72Dof-type zinc finger domain-containing protein