PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26712.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 189aa    MW: 22150.8 Da    PI: 4.5477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26712.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.71.8e-3081321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+yfF+k++ ++    rk   t sgyW+++ + +ev++++++ 
  KFK26712.1   8 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYFFVKKEDRE----RKGIETLSGYWEKSEE-EEVMEAGDRS 96 
                 79*************************999..49*************6...56789*******99875....66778899****9866.6777764444 PP

         NAM 100 .......vglkktLvfykgrapkgektdWvmheyrl 128
                         g +kt++fy g++p+g+ t W+m e+rl
  KFK26712.1  97 ynecihlEGRRKTFAFYIGKRPRGTITPWIMYEFRL 132
                 56667779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-325142IPR003441NAC domain
PROSITE profilePS5100531.5348162IPR003441NAC domain
PfamPF023656.7E-199132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNGRSMRLPP GFRFDPDDED LVFEYLAKKV LHRPMDFDLP ELRSCNVDPW DLLGEKNKEV  60
YFFVKKEDRE RKGIETLSGY WEKSEEEEVM EAGDRSYNEC IHLEGRRKTF AFYIGKRPRG  120
TITPWIMYEF RLLSSRATRW PSSSLSQKGE LGKWRAVKVV VMEENEEEIE ADEHASDESD  180
GEEVVQAGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-17613315143NO APICAL MERISTEM PROTEIN
1ut4_B1e-17613315143NO APICAL MERISTEM PROTEIN
1ut7_A1e-17613315143NO APICAL MERISTEM PROTEIN
1ut7_B1e-17613315143NO APICAL MERISTEM PROTEIN
4dul_A1e-17613315143NAC domain-containing protein 19
4dul_B1e-17613315143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-106NAC domain containing protein 97
TrEMBLA0A087GA101e-136A0A087GA10_ARAAL; Uncharacterized protein
STRINGA0A087GA101e-137(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.12e-95NAC domain containing protein 97