PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26516.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 273aa    MW: 30330.8 Da    PI: 6.1068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26516.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057698123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C+k Fs++  L  H++ H
  KFK26516.1 76 YTCHFCNKGFSSSQALGGHQNAH 98
                9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-772103No hitNo description
Gene3DG3DSA:3.30.160.601.1E-574102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.17576103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSSSSSSPK PEKLKAIAVA MDNPKEKETE INSPKQGLPE EVVSETRTER SSVGSGAVRT  60
GKEIMKIYQA RSNKIYTCHF CNKGFSSSQA LGGHQNAHKQ EREWDKKRKE MEADYPGLAF  120
LNPYLDKPHL LLGGYSQDAL SNDNHLGITL EPFKHSLYPS FSRGITDMKM MTIVPRVTPT  180
RFFTNGSSSS GVEPIASGNT NYPPLIPRNF SPAQTTNLSS DLFPQENILR EENLISKIDK  240
NNIVEIDDDD AHDDEHPEEG KSKSWGNDLS LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895791e-82AC189579.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011I15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421563.11e-114PREDICTED: uncharacterized protein LOC104707012
TrEMBLA0A087G9G40.0A0A087G9G4_ARAAL; Uncharacterized protein
STRINGA0A087G9G40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-107C2H2 family protein