PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25752.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33673.4 Da    PI: 7.1204
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25752.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.5e-1898150456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  KFK25752.1  98 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 150
                 4568889*********************************************9 PP
2HD-ZIP_I/II128.92.1e-4196187192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el 
   KFK25752.1  96 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDGLKSDNDSLLAHNKKLHAELV 187
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-1988154IPR009057Homeodomain-like
SMARTSM003892.6E-1795156IPR001356Homeobox domain
PROSITE profilePS5007116.55296152IPR001356Homeobox domain
CDDcd000868.74E-1697153No hitNo description
PfamPF000463.0E-1598150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-19100160IPR009057Homeodomain-like
PRINTSPR000311.1E-5123132IPR000047Helix-turn-helix motif
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5132148IPR000047Helix-turn-helix motif
PfamPF021834.3E-15152191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDNAHH LPSPTSLPSC PPHLFYGGGG GGGNYMMNRS MSFTGVPDHH  60
HLTQKSPTTT NNMNDQDQVG EEDNLSDDGS HMMLGEKKKR LNLEQVRALE KSFELGNKLE  120
PERKMQLAKA LGLQPRQIAI WFQNRRARWK TKQLERDYDS LKKQFDGLKS DNDSLLAHNK  180
KLHAELVALK KQDRKESTKI KRELAEASWS NNGSTENNNN SDINHVNMIK DLFPSTIRSA  240
TTTTTTTSTQ IDHQMVQDQD QGFCNMFNGI DETTSASYWA WPEQQQQHHS AHQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568309.20.0homeobox 3
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A087G7A00.0A0A087G7A0_ARAAL; Uncharacterized protein
STRINGA0A087G7A00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-152homeobox 3