PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25068.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 394aa    MW: 44976 Da    PI: 9.676
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25068.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.4e-32101155155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  KFK25068.1 101 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 155
                 68****************************************************7 PP
2G2-like93.81.4e-29286340155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++Wt +LH++Fve+v++LGG+ kAtPk il+lm  + Lt++hvkSHLQkYR+
  KFK25068.1 286 KTRINWTIDLHNKFVECVNHLGGPMKATPKGILKLMRTHALTIYHVKSHLQKYRS 340
                 68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4298158IPR017930Myb domain
SuperFamilySSF466894.66E-17100155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28100156IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23101156IPR006447Myb domain, plants
PfamPF002491.4E-8105154IPR001005SANT/Myb domain
PfamPF143793.7E-20185232IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PROSITE profilePS5129411.142283343IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-25285342IPR009057Homeodomain-like
SuperFamilySSF466898.42E-14285340IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21286340IPR006447Myb domain, plants
PfamPF002492.8E-6290339IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVPMQQPLPD QYLKPLYQRS CANDFAATNA SSASYSLSFE ATQDPQELCR RTYSNSNVTH  60
LNFSSSHHQP NKNHPRFSSP PPFSNHRGSV APNCGTVIGN KTRIRWTQDL HEKFVECVNR  120
LGGADKATPK AILKLMDSEG LTIFHVKSHL QKYRIAKYIP ESQEGKFVKR ACGKELSQLD  180
TKTGMQIKEA LQLQLDVQRH LHEQLEIQRN LQLRIEEQGK QLKIMMEQQQ KTKESLLKTP  240
NAETTSQLSK QSVDHVQTQF STEEQPSARS SSCESASELT SSSSIKTRIN WTIDLHNKFV  300
ECVNHLGGPM KATPKGILKL MRTHALTIYH VKSHLQKYRS LKHVQDSIEE SGRGFKQEEI  360
HPKGSRIKEL IRLQDEVGKH LQEQLEQLQT ERQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-21101343259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196298.21e-151myb-like HTH transcriptional regulator family protein
SwissprotQ0WVU31e-152PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A087G5B60.0A0A087G5B6_ARAAL; Uncharacterized protein
STRINGA0A087G5B60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-154G2-like family protein