PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23376.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 303aa    MW: 34758.6 Da    PI: 9.5757
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23376.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31148201255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  KFK23376.1 148 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 201
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-15145202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-28146202IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23148202IPR006447Myb domain, plants
PfamPF002498.9E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELFPSQPDL YLKINTRREE QENQEQEVER RLGFRSKASD SVQLTSNKIL GNNQEHQETH  60
LDRDLRSMLM MRPIRGIPLH QNQILDHYYY SSTTTTPPYF FNEANGQHMS RRLITNPNYS  120
SNHPHHRNRR LAQPQPPRFT AKRGVRAPRM RWTTTLHAHF VHAVQLLGGH ERATPKSVLE  180
LMDVQDLTLA HVKSHLQMYR TIKSTEKPTT SSGQSDTCEN GSHGSKERQE RDLQGLWNNS  240
SSEARFHLKA KASSVDIASN ENIDRRCASN ERLSSESSSL TGTRPETETP NLDFTLATPN  300
LSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-15149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-15149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-15149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-15149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-15149203458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872104.11e-163probable transcription factor KAN3
SwissprotQ941I21e-159KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A087G0H40.0A0A087G0H4_ARAAL; Uncharacterized protein
STRINGA0A087G0H40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-142G2-like family protein