PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S28396.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 82aa    MW: 8789.77 Da    PI: 9.0461
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S28396.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.4e-183770132
           GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                   C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ 
  Jcr4S28396.10 37 CTHCGTSSklTPMMRRGPSGPRSLCNACGLFWAN 70
                   ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-83177IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.7353167IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-113372No hitNo description
Gene3DG3DSA:3.30.50.102.8E-153570IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.06E-113673No hitNo description
PROSITE patternPS0034403764IPR000679Zinc finger, GATA-type
PfamPF003201.4E-153770IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MQRNKGQFTS SKKSDGTYGW GGGQDSGQDD GLQETSCTHC GTSSKLTPMM RRGPSGPRSL  60
CNACGLFWAN RIFSQTPPVI ST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068039.12e-46GATA transcription factor 25
SwissprotQ9LRH68e-34GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A067KZ886e-45A0A067KZ88_JATCU; Uncharacterized protein
STRINGXP_002527370.12e-42(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2429633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.29e-27GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]