PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S16208.10 | ||||||||
Common Name | JCGZ_03430, LOC105632295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24093.5 Da PI: 5.9545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 67 | 117 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+ ++g+ Jcr4S16208.10 67 NYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAASTIKGH 117 69****998.**********843...6**********************988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-33 | 66 | 126 | No hit | No description |
Pfam | PF00847 | 5.8E-13 | 66 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 67 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.774 | 67 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 67 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-37 | 67 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MECEAQPTAS SSSSSSSTSS FPSDPMNNSN KMNSPKSSKR DQEVVNKSNN ERNNKKAKAE 60 NAKIYPNYRG VRMRQWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA ASTIKGHSAH 120 LNFPELAHKL PRPASSSPKD IQAAAALAAA LNYQNDNEVA DLIISSQLGE PEPQWPDITE 180 ASHDTQESED DTFIDLPDLL QDISHQFNEF CYLSSW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 51 | 124 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070028.1 | 1e-159 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 7e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A067L716 | 1e-158 | A0A067L716_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_034027m | 9e-73 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35700.1 | 4e-50 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105632295 |
Publications ? help Back to Top | |||
---|---|---|---|
|