PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12858.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 21295.5 Da PI: 4.548 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.7 | 3.2e-19 | 11 | 53 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEde+l++a+++ G++ W+ Ia++++ gRt++ +k++w+ Jcr4S12858.10 11 KDAWSEEEDEILIEAHQKIGNR-WAEIAKRLP-GRTENTIKNHWN 53 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.655 | 6 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 8 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.67E-17 | 8 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-17 | 10 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 11 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.68E-14 | 13 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MIFGNVINVQ KDAWSEEEDE ILIEAHQKIG NRWAEIAKRL PGRTENTIKN HWNATKRRQF 60 SIRRKGKESN SRGTLLQSYI KTLTTHDQDQ KNNYSESSFS SPFVSDQLNA WTTDYYDYIS 120 EVLNVSLEAN NLFDDNSYGF GVEESQMQYE MAMELDSLIK GTTTSDEARK EMDLLEMITQ 180 GTQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 1e-20 | 7 | 60 | 1 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 1e-20 | 7 | 60 | 1 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034638 | 0.0 | KM034638.1 Jatropha curcas clone JcMYB018 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534745.1 | 1e-124 | transcription factor MYB118-like | ||||
TrEMBL | A0A067LGF9 | 1e-122 | A0A067LGF9_JATCU; MYB family protein | ||||
STRING | cassava4.1_028573m | 7e-51 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-32 | myb domain protein 98 |