PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S12353.20 | ||||||||
Common Name | JCGZ_27010, LOC105630334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 29075 Da PI: 9.5632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Jcr4S12353.20 101 FSCNYCQRKFYSSQALGGHQNAH 123 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.24E-6 | 98 | 128 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEPPKSDSET SVSDNASSQK PFTESQKKAK DQEEKKQKQR QDQEDHLVLD LSLCSKDSKQ 60 ELNLIDSFEM GSSQKSFLDS SNNNESDDQQ QQQQQQQHRV FSCNYCQRKF YSSQALGGHQ 120 NAHKRERTLA KRGQRSFINI SSANSYRYSS MGSLPLHGSF NRSLGIQVHS LIHKPAFYGQ 180 NGWSRQPIVQ QPAVASFNIG NSGFGSASSN GTAKFETSRK FSPIKEGFAG FWWDIAGGGG 240 GSHLKTKQDD LQKLDLSLKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067528.1 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | A0A067L0N6 | 0.0 | A0A067L0N6_JATCU; Uncharacterized protein | ||||
STRING | XP_002527314.1 | 6e-96 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-40 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630334 |
Publications ? help Back to Top | |||
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