PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12353.20
Common NameJCGZ_27010, LOC105630334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 260aa    MW: 29075 Da    PI: 9.5632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12353.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002101123123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  Jcr4S12353.20 101 FSCNYCQRKFYSSQALGGHQNAH 123
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-698128No hitNo description
PROSITE profilePS5015711.427101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEPPKSDSET SVSDNASSQK PFTESQKKAK DQEEKKQKQR QDQEDHLVLD LSLCSKDSKQ  60
ELNLIDSFEM GSSQKSFLDS SNNNESDDQQ QQQQQQQHRV FSCNYCQRKF YSSQALGGHQ  120
NAHKRERTLA KRGQRSFINI SSANSYRYSS MGSLPLHGSF NRSLGIQVHS LIHKPAFYGQ  180
NGWSRQPIVQ QPAVASFNIG NSGFGSASSN GTAKFETSRK FSPIKEGFAG FWWDIAGGGG  240
GSHLKTKQDD LQKLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067528.10.0zinc finger protein 1
TrEMBLA0A067L0N60.0A0A067L0N6_JATCU; Uncharacterized protein
STRINGXP_002527314.16e-96(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-40C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]