PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11889.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 141aa MW: 16006.8 Da PI: 7.129 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H+++H Jcr4S11889.10 22 YSCSFCKKGFSNAQALGGHMNVH 44 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.46E-7 | 19 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 20 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.006 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEINQSKQTI WSSGELQSAR SYSCSFCKKG FSNAQALGGH MNVHRKDRAK LRQAPDDDDE 60 NLLSLDIAKS NQPDHILSKD KNLCTEEEDE AEAEDKNKKK KMQFSSHGST AGRIEVLDLE 120 LRLGPDKHHQ TSTDKTKRQF F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075031.1 | 1e-101 | transcriptional regulator TAC1 | ||||
Swissprot | Q9SR34 | 4e-21 | TAC1_ARATH; Transcriptional regulator TAC1 | ||||
TrEMBL | A0A067KHT6 | 5e-67 | A0A067KHT6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030622m | 3e-28 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 1e-18 | C2H2 family protein |
Publications ? help Back to Top | |||
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