PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S10318.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ARF | ||||||||
Protein Properties | Length: 421aa MW: 47184.5 Da PI: 8.5607 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.4e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++a e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++ Jcr4S10318.10 156 FCKTLTASDTSTHGGFSVLRRHAVEClppldmSRQ-PPTQELVAKDLHGNEWRFQHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 248 99*****************************7333.34459************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ Jcr4S10318.10 249 ELRVGVRRA 257 9*****996 PP | |||||||
2 | Auxin_resp | 119 | 3.9e-39 | 282 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a++a+s +++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+d++rWp+SkWr+Lk Jcr4S10318.10 282 ASRAVSRGTMFTVYYKPRTSPSEFIVPFDRYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSTRWPESKWRCLK 364 57899****************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-41 | 152 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-39 | 152 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.06E-22 | 154 | 256 | No hit | No description |
PROSITE profile | PS50863 | 11.66 | 156 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-22 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-37 | 282 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
CCKKEIPIKG NSGNVGGESF SPGYSEPNAM EGQKGHSRRQ ASARDAETAL YTELWHACAG 60 PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADQQMPVYCL PSKILCRVIN VLLKAEPDTD 120 EVYAQVTLVP EAIQDENAVE KQPSQPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHAVE 180 CLPPLDMSRQ PPTQELVAKD LHGNEWRFQH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF 240 IFLRGENGEL RVGVRRAMRQ QGNVPSSVIS SHSMHLDVLA TASRAVSRGT MFTVYYKPRT 300 SPSEFIVPFD RYMESVKNNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DSTRWPESKW 360 RCLKVRWDET SAIPRPDRVS PWSIEPALAP PALNPLPVPR PKRPRSSMVP SSPDSSVLAR 420 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-180 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldy_B | 1e-180 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022004 | 0.0 | KF022004.1 Jatropha curcas auxin response factor (ARF) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090598.2 | 0.0 | auxin response factor 2 | ||||
Refseq | XP_012090599.1 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A067JF52 | 0.0 | A0A067JF52_JATCU; Auxin response factor | ||||
STRING | POPTR_0012s10790.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |