PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09148.30

Common Name

JCGZ_08700

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 388aa MW: 44619.2 Da PI: 6.6193

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09148.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.6	7.8e-47	92	217	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p+G+rF+P d elvv yLkkk+++ +l++ + i+ev++yk++P++L + ++e+ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+++s + Jcr4S09148.30 92 PAGYRFKPYDRELVVSYLKKKIDNVPLPA-NRIREVQLYKHNPETLAaNYKPHGENEWYFFTPRDRKYPNGDRPNRAAGDGYWKATGADKPIYS-G 185 89*************************.77**********9334445788***********************************. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g +vg +k Lvfykg+ p+g ktdW+mheyr+ Jcr4S09148.30 186 GIKVGFRKALVFYKGKPPRGDKTDWIMHEYRV 217 ******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-55	88	243	IPR003441	NAC domain
PROSITE profile	PS51005	54.309	91	243	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	92	217	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEDQYKREVT VTNPENKDNT ITDQSHSPSI YHLPSSPTNT DFSSNTSVID PLINNGNNNN 60 NSTNIIVASV DGDNGGFRVL ADNEELYLDS FPAGYRFKPY DRELVVSYLK KKIDNVPLPA 120 NRIREVQLYK HNPETLAANY KPHGENEWYF FTPRDRKYPN GDRPNRAAGD GYWKATGADK 180 PIYSGGIKVG FRKALVFYKG KPPRGDKTDW IMHEYRVNEP QKRKRQGNDM KLDDWVLCRI 240 YKKFDKGFRA PARPRGQAPT KETDAYENEH ELEHSTMLPI RESKENLLPI VGTYNHEINP 300 YLNTHIANST LVASHHFNGY VESFDEQYAY GIGPVLGPNL PFQSHSNPST DYFNYHPLEN 360 LDTLGDFSSF DNYDHFPPYQ HKNGDNYH

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEDQYKREVT VTNPENKDNT ITDQSHSPSI YHLPSSPTNT DFSSNTSVID PLINNGNNNN  60
NSTNIIVASV DGDNGGFRVL ADNEELYLDS FPAGYRFKPY DRELVVSYLK KKIDNVPLPA  120
NRIREVQLYK HNPETLAANY KPHGENEWYF FTPRDRKYPN GDRPNRAAGD GYWKATGADK  180
PIYSGGIKVG FRKALVFYKG KPPRGDKTDW IMHEYRVNEP QKRKRQGNDM KLDDWVLCRI  240
YKKFDKGFRA PARPRGQAPT KETDAYENEH ELEHSTMLPI RESKENLLPI VGTYNHEINP  300
YLNTHIANST LVASHHFNGY VESFDEQYAY GIGPVLGPNL PFQSHSNPST DYFNYHPLEN  360
LDTLGDFSSF DNYDHFPPYQ HKNGDNYH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	80	243	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	80	243	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	80	243	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	80	243	6	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-56	80	243	6	165	NAC domain-containing protein 19
4dul_B	4e-56	80	243	6	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775335	0.0	KC775335.1 Jatropha curcas NAC transcription factor 057 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535570.1	0.0	NAC domain-containing protein 67
TrEMBL	R4N7R6	0.0	R4N7R6_JATCU; NAC transcription factor 057
STRING	cassava4.1_030134m	9e-99	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-61	NAC domain containing protein 25

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]