PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S08518.20 | ||||||||
Common Name | JCGZ_08958, LEC1-2, LOC105636210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 226aa MW: 25175 Da PI: 7.0707 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.1 | 1.5e-54 | 58 | 154 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+tsea+++cqre+rkti+++d+l+a+++lGf+dy+epl+vyl++yre+eg+ Jcr4S08518.20 58 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTITAEDVLYAMSKLGFDDYIEPLTVYLHRYREMEGD 153 69*********************************************************************************************9 PP NF-YB 97 k 97 + Jcr4S08518.20 154 R 154 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-51 | 53 | 160 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.07E-38 | 61 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-25 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-17 | 92 | 110 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 95 | 111 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.4E-17 | 111 | 129 | No hit | No description |
PRINTS | PR00615 | 1.4E-17 | 130 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MERGGFHGYR KLPTTSSGLK LSEMNMRLDE INRSGGSGGS NNNKNNTNST GDDNECTVRE 60 QDRFMPIANV IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITSEANER CQREQRKTIT 120 AEDVLYAMSK LGFDDYIEPL TVYLHRYREM EGDRSSIRSE PLVKRNVEFG PLGVATAFAP 180 AFHMSHHHHG FFGGAAAAMG GYTRDPSNAT SSQHALANGE SFGQHK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-60 | 57 | 149 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF022021 | 0.0 | KF022021.1 Jatropha curcas leafy-cotyledon protein 1 (LEC1-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295673.1 | 1e-171 | nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 4e-76 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A067KTB7 | 1e-169 | A0A067KTB7_JATCU; Leafy-cotyledon protein 1 | ||||
STRING | VIT_00s0956g00020.t01 | 1e-113 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.1 | 6e-73 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105636210 |