PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S07384.20 | ||||||||
Common Name | JCGZ_15934, LOC105630754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 40812.7 Da PI: 4.3511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 191 | 234 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Jcr4S07384.20 191 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 234 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 185 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-16 | 188 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 191 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-12 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-15 | 192 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.34E-5 | 192 | 238 | No hit | No description |
CDD | cd04873 | 3.42E-4 | 283 | 324 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MEINEHGFLE ELLSLRRDCW ETTPSFPTEM SELFSSGWNF DYYFDDNNLN TSTTAVTLPQ 60 NSFNEEFSSP TEQDFNNYYF NEVSCPFIDE FSTTQQFTDE FSAPQFTDSS YNTLDTPPFH 120 VQEDTTPMSM MEDDQDLGLL QNNMTSLDIQ KTTCKVEPMQ SPEAVPVFNI GACPERKLRG 180 KKLEGQPSKN LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELLERINN 240 LQQETEVGSN QLNMMGIFKD TKASEFIVRN SPKFDVARGN EDTRIEICCA SKPGLLLSTV 300 NTLEALGLEI QQCVISCFND FAMQASCSEE LEQRRHISSE DIKQALFRSA GYGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 193 | 200 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068085.1 | 0.0 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 8e-85 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A067KZB7 | 0.0 | A0A067KZB7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010965m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-87 | beta HLH protein 93 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105630754 |