PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06462.20
Common NameJCGZ_14576, LOC105643171
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 452aa    MW: 48488.8 Da    PI: 5.9983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06462.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.7e-052963183355
                    .TTS-STCHHHHHHHHHHHHHHH CS
            HLH  33 apskKlsKaeiLekAveYIksLq 55 
                    ++s++ +Ka++L +++eY+k+Lq
  Jcr4S06462.20 296 NQSERTDKASMLDEVIEYLKQLQ 318
                    5899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-4295322No hitNo description
Gene3DG3DSA:4.10.280.101.8E-6296330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-7296340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSQCVPSWNL DDSNPAPAKL SLRSHSNSTA PDVPMLDYEV AELTWENGQL AMHGLGPPRA  60
PAKPLASASP SKYAWDKPRA SGTLESIVNQ ATRLPQRKLG LDACGSDELV PWFENNRAAA  120
VAASSATTTM DALVPCSNRT TDDRKKRAME SVPALGNCVV GSSTRVGSCS GPTATQDEDA  180
LLTAKRARVA RVPVAPEWSS RDQSVSCSAT FGRDSQHVTL ETCEPDLGMD FTSTSFGSQE  240
NTSCGKPGTK TATVDENDSV CHSRPQREEA DEEDKKKGNV KSSASTKRSR AAAIHNQSER  300
TDKASMLDEV IEYLKQLQAQ VQMMSRMNMQ PMMLPMAMQQ QLQMSMLAPM NMGIGIGMGM  360
GVVDMNSISR PNIAAGISPA LHPSAFMPVM AASWDGSAER LQAAASTTVM PDPLSAFLAC  420
QSQPMTMDAY SRMAAMYQQL QQQPLPASSS KS
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083633.10.0transcription factor UNE10
SwissprotQ8GZ381e-98UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A067K9580.0A0A067K958_JATCU; Uncharacterized protein
STRINGXP_002511647.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]