PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06401.10
Common NameJCGZ_23627, LOC105629512
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 213aa    MW: 23052.5 Da    PI: 4.9978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06401.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-183181155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Jcr4S06401.10 31 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAIAYDVAALALKG 81
                   68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-113181IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-203291IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-293291IPR001471AP2/ERF domain
PROSITE profilePS5103222.8933289IPR001471AP2/ERF domain
SMARTSM003804.1E-343295IPR001471AP2/ERF domain
CDDcd000182.99E-313391No hitNo description
PRINTSPR003674.3E-83344IPR001471AP2/ERF domain
PRINTSPR003674.3E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MHYSQQQSSN STGSENNAAS ASAARPAGRH PVYRGVRRRS SGKWVSEIRE PRKPNRIWLG  60
TFPTPEMAAI AYDVAALALK GRDTELNFPN SAPSLPVPAS TSPRDIQAAA ASAASALGAA  120
RDALGIGNNQ LEITNNNYNY NINQTVLGQE SSIMTDHQFV DEDLIFDMPN LLVNMAEGML  180
LSPPRLDFSA SADATDDDHQ NPSVGEQNLW KFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1530901273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066511.11e-156ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A067L2P01e-155A0A067L2P0_JATCU; Uncharacterized protein
STRINGcassava4.1_031718m4e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-41ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]