PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05874.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 930aa    MW: 102587 Da    PI: 6.9623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05874.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-18334439199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    f+kvl+ sd+++ grlvlpk +a+++        ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Jcr4S05874.40 334 FEKVLSASDAGRIGRLVLPKACAKAItmqayfpPISQPEGLPIRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 427
                    99*******************************555557778***************9989999999***9.********************876. PP

                    SEE..EEEEE-S CS
             B3  88 sefelvvkvfrk 99 
                     e++lv++++++
  Jcr4S05874.40 428 PEGKLVMGFRKA 439
                    777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-27326442IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-18331440IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-21332438No hitNo description
SMARTSM010193.7E-18334440IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828334440IPR003340B3 DNA binding domain
PfamPF023621.8E-15334439IPR003340B3 DNA binding domain
PROSITE profilePS5105014.138604654IPR011124Zinc finger, CW-type
PfamPF074962.1E-12609651IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MESKTCMNAL CVASTSSVWK KGWPLRSGEF ANLCDKCGSA YEQSIFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRFLLEL LDGGGVNCIS CTKSSGVNSV MGNEKSSGFG MSKIDDTGES  120
QSADNQLDGD RKLLQLGNTI EVIGSRHLLQ LQNDEASGLF RQMKQEDNLT PMGEIGSTSL  180
SNFNQASNGL SQTTKPEIRK TNIATKELYE SLAQTNLSIT LGSPLVNSNP YPGVVIDERA  240
QSKASSPLQH GSRSRHLLPK PPKSVLTTGL EANTGMVSQI RVARPPAEGR GRNQLLPRYW  300
PRITDQELQQ ISAEIYITLT MWYLSSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAKAIT  360
MQAYFPPISQ PEGLPIRIQD VKGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT  420
VTFSRMDPEG KLVMGFRKAS NSMAMQDIQP SAIPNGVHTS ESFFSGVFEN LPIISGYSGL  480
LQSLKGSSDT HLNALSKNLH SANGDISWHK SEKHEERTRE SLLLPSLLVP ERKRTRNIGS  540
KSKRLLIDSL DALELKLTWE EAQDLLCPPP SVKPSIVTIE DHDFEEYEEP PVFGKRSIFV  600
VRSIGGQEQW AQCDSCSKWR RLPADILLPP KWTCADNAWD QSRHSCSAPD ELTPRELENL  660
LRLNKDFKKR RIASVHRPAQ EHESSGLDAL ANAAILGDEG DPSTIAVATT TKHPRHRPGC  720
SCIVCIQPPS GKGKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIV QRNQHMAGPR  780
DDAEVESSSK HVSTPQDPSE NEVRSVTELE SKSQSNNLSN KMVESGKGHI DLNCHPDRED  840
ESQAGLSRMS MMSLLQVASL PLETYLKQNG LTSLVTEQQG SSASHMPPQT GESEGLLPED  900
CQLVSAVLEQ ESGGEENNGP GQEQSQNDPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-633014462131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1747758KRRFKTLMMRKK
2747760KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091052.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A067JPC90.0A0A067JPC9_JATCU; Uncharacterized protein
STRINGcassava4.1_001408m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]