PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05079.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 658aa MW: 73899.5 Da PI: 6.9854 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 315 | 329 | 12 | 26 |
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ Jcr4S05079.20 315 SGSCPRGEKCHFLHD 329 69************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 8.06E-38 | 7 | 226 | No hit | No description |
PROSITE profile | PS50103 | 13.319 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0046 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-7 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 337 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 9.4E-38 | 378 | 494 | IPR006768 | Cwf19-like, C-terminal domain-1 |
Gene3D | G3DSA:3.30.428.10 | 4.6E-5 | 379 | 479 | IPR011146 | HIT-like domain |
SuperFamily | SSF54197 | 7.65E-7 | 385 | 459 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 1.4E-16 | 539 | 622 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MAPPRILLCG DVLGRLNQLY KRVQSVNKSA GPFDALFCVG QFFPGSPELL EEFMDYVEGR 60 SQIPLPTYFI GDYGIAAPKV LAAASRNSAN LGFKMDGLKV CENLFWLRGS GKFTLHGGLS 120 VTYLSGRQSP DSQQFGIYSQ DDVDALRALA EEPGIVDFGV TNRASISDIP AGVSDSVGSD 180 STISELVAEI KPRYHVAGTK GVFYAREPYS NTDALHITRF LGLASVGNKD KQKFIHAISP 240 TPGSMMTAAE ISTKPSNTTL SPYTFVEQTA LLKEITKRPS DNVSDSQYWR YDVSQKRQKT 300 GTVDGDKLCF KFVYSGSCPR GEKCHFLHDM DARQQYLRGV CIDFLMKGKC ERGPDCSFKH 360 TFQNEGESYS HRRRGSENSN ANRSKECWFC LSSPSVESHL IISIGENYYC ALAKGPLVQD 420 HVLLIPVEHS PNTVSLPEEC ESELVEFRNS LKLYYKNQGK EAVLFEWVSK RGTHANLQVA 480 PVPSSRAAVI QDIFNMAAEK LGFKFVIMKX LSAPYLLRKF QIGHLEERFS ACSSSQHLID 540 GRKWLRTQFD RNHSFFYVEL PDGTVLLHSV DENEKFPAQF GREVLAGLLN KPERADWRAC 600 TLSKEEEMKM VEEFKKQFGE LDPNRVPPFQ CWDTELSFNG RISSLTTTQD DHHYFMVV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ655599 | 2e-98 | JQ655599.1 Hevea brasiliensis microsatellite HB 41 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076939.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Refseq | XP_020536543.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Swissprot | Q84WU9 | 0.0 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | A0A067KFS4 | 0.0 | A0A067KFS4_JATCU; Uncharacterized protein | ||||
STRING | XP_002514115.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7132 | 19 | 23 |