PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05022.10 | ||||||||
Common Name | JCGZ_21825, LOC105649885, WRKY39 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 34125.3 Da PI: 10.3653 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.9 | 2.3e-09 | 287 | 305 | 3 | 21 |
-SS-EEEEEEE--TT-SS- CS WRKY 3 DgynWrKYGqKevkgsefp 21 D y+WrKYGqK++kgs++p Jcr4S05022.10 287 DDYSWRKYGQKPIKGSPHP 305 99***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.8E-18 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-9 | 273 | 305 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.002 | 280 | 305 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-7 | 283 | 305 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-5 | 287 | 305 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEEVEEANRA AVESCHRVLS FLSQTQDQVQ YRNLMLETGE AVFRFKRVIS LLNSGLGHAR 60 VRKLKKLPTP LSQNILLDNP HHRTDHSSKN FQLLQSGNDF DNHPIQELGS SSAKSSLCLG 120 GPSLELSSSG KRPSHLAQQT PAAHYHFLQQ HHHLQLQQQQ QQQQQQQMKQ QAEMIFRRSS 180 SGMNLNFDNN TSCTPTMSST RSFISSLSID GSVANMEGSA FHLIGAPRSS DQSSQQHKRK 240 CSGRGEDGSV KCGNSGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS WRKYGQKPIK 300 GSPHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485291 | 0.0 | KC485291.1 Jatropha curcas WRKY transcription factor (WRKY39) gene, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092091.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_012092092.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-93 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | S5CKB4 | 0.0 | S5CKB4_JATCU; WRKY transcription factor 39.1 | ||||
STRING | XP_002520995.1 | 1e-174 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.2 | 2e-54 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Entrez Gene | 105649885 |
Publications ? help Back to Top | |||
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