PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04452.10
Common NameJCGZ_05530, LOC105628104
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 842aa    MW: 92018 Da    PI: 5.1579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04452.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-0996123127
                    --S---SGGGGTS.--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                    ykt+lC++f+r+   C++G+ C++aHg+
  Jcr4S04452.10  96 YKTSLCSYFRRYSeSCSHGSECRYAHGE 123
                    9*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-1293129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.4E-694127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.24995124IPR000571Zinc finger, CCCH-type
SMARTSM003560.008195123IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-696123IPR000571Zinc finger, CCCH-type
CDDcd005908.34E-6189254No hitNo description
Gene3DG3DSA:3.30.70.3308.9E-6192254IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549289.49E-7192266IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000762.1E-4193253IPR000504RNA recognition motif domain
PROSITE profilePS5168732.385311842IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.83E-9313339IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.83E-9371479IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.5E-40614714IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-29614714IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.1E-9658716IPR025714Methyltransferase domain
CDDcd024401.05E-5660712No hitNo description
Gene3DG3DSA:3.40.50.1502.5E-40796819IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-29799819IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MGSSPNNEHS LTETLNPCTE TSTAMTLHDL PNQRHDQEQL QPSNPPPTAQ VSASAAATTA  60
NDGNSSGSNL CEKRKREETE QPETQQIIDH SLNPYYKTSL CSYFRRYSES CSHGSECRYA  120
HGEEELRPRP DNTWDPTSER AKKAMKLEEK KDYIHEDKEE EIMMTEMLVD NGEAEGGEGG  180
CLDPELSKCL VHLPRKWNSD NFRNFLNEQG VHFKLAKKKK GMIVGFVTFE GVDQLKRASE  240
ELQGKSVGNK KIKVADVIPR SYDKKIKSAM ELPQNTPQKM EPSEVTEDGD TNDDSSILDG  300
SSSKAKSARD AVTPLSHMPY EDQLEHKKSS IMQMLKKLTR NTRKACPHGV SLPEWVLKSK  360
EIGGLACKLE GILESPIVNG YRNKCEFSVG CSLQGKPIVG FMLGNFRDGV TAVEEPADCP  420
NVSSIAYKYS FIFQEFLQES ALPIWNRFNN TGFWRQLTVR EGRVPEKDAD VKNHNVNISE  480
VMLIVQVCLA GFDDELINNE LGRLSHAFAA GAAANSPPLP LTVLVLQVQW GLSIGGYSGN  540
SGLQDHQGIS NVAPADAPLR ILPLPNENSS KVEAGNNVVP NAEGSSEPDA IKNVVPNAEN  600
ISELGTTKNV IEVRIHDYIS NLRFSISPTA FFQVNTLAAE KLYALAGDWA GLGPDTLLFD  660
ICCGTGTIGL TLAHLVGMVV GIEMNASAVS DAHRNAEING IKNCRFVCAK AENVMASLLK  720
EYLNGCQKQD KLPNACGSGD KDITTDKDKD NPTGNENSSH ELGKDKGGSG CSENGGQENQ  780
NQLQKSSSSE DENSSIPQFK NVVAIVDPPR SGLHPTIQQY NLRESFLSSS SSLVAFNCSC  840
TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zq1_A9e-18616721262371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345127e-40AM434512.1 Vitis vinifera contig VV78X163489.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532585.10.0zinc finger CCCH domain-containing protein 24 isoform X2
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A067L9Z20.0A0A067L9Z2_JATCU; Uncharacterized protein
STRINGcassava4.1_001501m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]