PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04166.20 | ||||||||
Common Name | JCGZ_10017, LOC105631633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 391aa MW: 45199.3 Da PI: 8.1952 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.6 | 1.7e-11 | 5 | 86 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ + ++p +f++++g++ s +l + g +W v l k ++++++ +GW+eF + ++ g f+vF+++g+ f +v++f+ Jcr4S04166.20 5 EKLYLQRIPDNFVRKFGND--LSAFGRLSVPGGPVWPVGL--IKADDKFWFHEGWQEFMERYSIRIGYFLVFRYEGHAVF--TVHIFN 86 5556668*********877..77788999***********..9*******************************998888..888885 PP | |||||||
2 | B3 | 58.8 | 9.9e-19 | 290 | 380 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae+h +g++ ++l+ ++g++W v++ yr+++ l++GW eF +n+L egD++vF+l ++++ l+v+vfr Jcr4S04166.20 290 VLRPSYLYRGCIMYLPSCFAEKHlQGVSG---FIKLQFSDGKQWPVRCLYRGGR--AKLSQGWYEFSLENNLGEGDVCVFELLRSRDIVLKVTVFR 380 78899******************977744...59999999********665555..66***********************999999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.533 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-6 | 4 | 88 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-8 | 9 | 86 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.63E-17 | 9 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-17 | 10 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-12 | 11 | 86 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.4E-24 | 280 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-24 | 281 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.87E-21 | 285 | 380 | No hit | No description |
SMART | SM01019 | 7.5E-18 | 287 | 382 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 287 | 382 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-16 | 290 | 380 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MEYNEKLYLQ RIPDNFVRKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW FHEGWQEFME 60 RYSIRIGYFL VFRYEGHAVF TVHIFNLSAS EINYQSNALS GRRYLVFEEM EDDDFIEHLS 120 SSSPCLIPNS LKSKVFDERL DQMTIKKSCN PPALQNLFHE SKLNYINWSG EGNLHLSKGA 180 SISHMVDQDT RDVGVQFNAI EGKNCIEDVK FYSPDGVGEM QKPKKQGRKK RKLDPNEQHP 240 SSQQEDEADV RFRFYESASA RKRTVTAEER ERAINAAKTF EPVNPFCRVV LRPSYLYRGC 300 IMYLPSCFAE KHLQGVSGFI KLQFSDGKQW PVRCLYRGGR AKLSQGWYEF SLENNLGEGD 360 VCVFELLRSR DIVLKVTVFR VLENAGRMNR P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-75 | 253 | 383 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-75 | 253 | 383 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 231 | PKKQGRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069205.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-122 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A067LCQ1 | 0.0 | A0A067LCQ1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_006855m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-79 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105631633 |
Publications ? help Back to Top | |||
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