PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04122.20

Common Name

JCGZ_11820

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 216aa MW: 24324.3 Da PI: 5.7642

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04122.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.5e-10	46	80	12	48
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++d k G++ W++Ia +++ gRt++++k++w++++ Jcr4S04122.20 46 FKDMEKANGTK-WSLIAGRLP-GRTPNDVKNFWNTHM 80 56666778999.*******.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.133	36	84	IPR017930	Myb domain
SMART	SM00717	4.3E-4	37	82	IPR001005	SANT/Myb domain
CDD	cd00167	2.64E-6	43	80	No hit	No description
SuperFamily	SSF46689	3.98E-9	45	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-12	51	81	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	52	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MIGNSQVVAL ATRQDMYCIV YPWGALHQLE EVLGLLQKTT FSEAAFKDME KANGTKWSLI 60 AGRLPGRTPN DVKNFWNTHM RRKLKPSSPY CKEDDVKGKT VKIIKPRPRK LSNNTSLFTA 120 NVSNNLDNGK ASVPVAFPPL DNKDDNKINN QSNTTNTFAG ANAPTFFEGE SSSKQNDWWS 180 NFSFDEEILN LFHNEEQELI YDGIEMDIGI MGSQDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034740	0.0	KM034740.1 Jatropha curcas clone JcMYB121 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020537422.1	2e-81	transcription factor MYB114 isoform X1
TrEMBL	A0A067KHX0	1e-160	A0A067KHX0_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16722	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-14	myb domain protein 113

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]