PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04091.20 | ||||||||
Common Name | JCGZ_00205, LOC105629739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 148aa MW: 17272.1 Da PI: 10.5075 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.4e-14 | 29 | 119 | 13 | 96 |
TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +++++ p +f+++ +++ e++ ++t d++g++W+++l++ +k+s+ ++ + W+ Fvk gL++gD v+F+ +++ ++ ++ Jcr4S04091.20 29 EHQFIAPSDFLKKLadlDENGESKEKITSFDRDGKEWTFRLSIrktEKYSKPTLTPASWRPFVKHFGLRDGDAVIFYIIRHdGARKIQIRG 119 456899999*99999994444566689999***********985555555558888*********************99765666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-14 | 15 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-12 | 17 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-11 | 17 | 118 | No hit | No description |
SMART | SM01019 | 6.8E-5 | 19 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-11 | 29 | 117 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.052 | 35 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MANTKLLPEI KSDSIYKLCE KPLRKTDLEH QFIAPSDFLK KLADLDENGE SKEKITSFDR 60 DGKEWTFRLS IRKTEKYSKP TLTPASWRPF VKHFGLRDGD AVIFYIIRHD GARKIQIRGL 120 RKIIFLGKPT WKEVKKVENQ ALTSHSRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664346.1 | 5e-37 | uncharacterized protein LOC110653034 | ||||
TrEMBL | A0A067L598 | 1e-104 | A0A067L598_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030218m | 8e-38 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15290 | 3 | 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 105629739 |
Publications ? help Back to Top | |||
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