PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04091.10
Common NameJCGZ_00206, LOC105629740
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 125aa    MW: 14463.7 Da    PI: 9.2439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04091.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-1125882183
                   HH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3 21 kfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                   + + +   ++ + +tlt++d sg +W + +++  +++sgr +lt GW eFv+ ++L++gD ++++
  Jcr4S04091.10 25 SSTGQLPFEEGQMMTLTVYDDSGCRWIFPCSIeeDGGSGR-FLTLGWLEFVNKKNLRVGDKLIIH 88
                   33335555677899****************9965556655.69*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-10488IPR015300DNA-binding pseudobarrel domain
CDDcd100179.07E-9588No hitNo description
Gene3DG3DSA:2.40.330.106.9E-12589IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-8991IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MANLKFFSKT LTKIDIERKL SVLLSSTGQL PFEEGQMMTL TVYDDSGCRW IFPCSIEEDG  60
GSGRFLTLGW LEFVNKKNLR VGDKLIIHEE FMNNNSKGQA NPRTWNRIYV QRKIRLFGVD  120
IWGNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067LE914e-87A0A067LE91_JATCU; Uncharacterized protein
STRINGcassava4.1_028443m3e-37(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]