PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02875.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 572aa MW: 63974.9 Da PI: 6.7178 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.9e-09 | 433 | 480 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+++q+G+g+W+ I + + Rt+ +++++w+++l Jcr4S02875.50 433 WTLSEVTKLIDGIAQYGTGRWTDIKKLLFsssAYRTPIDLRDKWRNLL 480 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-13 | 422 | 486 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.318 | 425 | 484 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-9 | 429 | 482 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.74E-16 | 431 | 481 | No hit | No description |
SuperFamily | SSF46689 | 1.5E-15 | 431 | 502 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-7 | 433 | 480 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MSADASSSLT EVNEMDRKAH VNKKFASMKC QRGDYVVKVD ETSVPAVEDE TIEVQHLLAE 60 PKPDHASVDG VLCFGGLDCN NTQGHDDLEL GVLDGLLDEV DEVDDIHAAN DISGACEDFL 120 LDIELAEKVS FLDCAPFGRL QLGNSSSESQ SPGFSGSSNV ANGLSESSTA TVPEAECKSG 180 SLKKRTVKCE LNDSSGNKWD YQAGVDVFTT SHDLEELDEV DYAKPLESGL SSDENEKKVV 240 QASKTGTLLR QKRTRKPTKR YIEEFSVPKS KHAVEGQNIL ATASKGEHLT IMSHNELQGA 300 TYVPKEETLS ETITQETLDD DEKLSDLKSK CVTGRRKVSS HASKDTRLKF ESRNELHHVR 360 GLEICSWRGS LSLELELELL FESRPRRGRP KKLPSASVLE SDEECTASES EDDCTKRRRS 420 KKSNDRRKHQ RMWTLSEVTK LIDGIAQYGT GRWTDIKKLL FSSSAYRTPI DLRDKWRNLL 480 RASSAQKQKL KQNKKELYRP VYKIQSPAGF EKPHMAILVE QKLNHAIRPL PKPVIRRIRE 540 LASLHPYPRF TPGGRYIQTG PQILNFSIWG CG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082380.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_012082381.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_012082382.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_012082383.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_012082384.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_020538155.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_020538156.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
Refseq | XP_020538157.1 | 0.0 | uncharacterized protein LOC105642236 isoform X1 | ||||
TrEMBL | A0A067JZ12 | 0.0 | A0A067JZ12_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_005037m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-20 | TRF-like 6 |