PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02872.10
Common NameJCGZ_26160, LOC105648516
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 216aa    MW: 23138.2 Da    PI: 4.6034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02872.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-1656104255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Jcr4S02872.10  56 TYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYSTPEMAAAAYDVAALSLKG 104
                    69***6..678*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-2756114IPR001471AP2/ERF domain
PROSITE profilePS5103220.19256112IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1856114IPR016177DNA-binding domain
SMARTSM003806.1E-2856118IPR001471AP2/ERF domain
CDDcd000183.25E-1857114No hitNo description
PRINTSPR003675.5E-75768IPR001471AP2/ERF domain
PfamPF008472.0E-957104IPR001471AP2/ERF domain
PRINTSPR003675.5E-794114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MASPNADSPP QPYQPDQVLD PIAAPEQQSP RSTSSNPSPR PIRSPSGFPS TGRHPTYRGI  60
RSRSGKWVSE IREPRKTTRI WLGTYSTPEM AAAAYDVAAL SLKGPDAALN FPESILSYPI  120
PASMSASDIR AAAATAAMAR QPKPESGSNP STGPLEXXGI SYVESGQKFI DEEEILNMPN  180
LLVDMAEGML LSPPRINTPS SDDSAGNSDE GLWSYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14541131273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090325.11e-135ethylene-responsive transcription factor ERF027
SwissprotQ9FJ901e-49ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A067JS161e-133A0A067JS16_JATCU; Uncharacterized protein
STRINGcassava4.1_015402m5e-82(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-41ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]