PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02856.10 | ||||||||
Common Name | JCGZ_16312, LOC105650765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23196.4 Da PI: 6.9645 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.3 | 5.7e-29 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C++lr++C++dC+l++ + p++q++++ +v+k+FG++ ++++++++p+++r+ +++sl++eA r+ +Pv+Gavg++++++++++q++ Jcr4S02856.10 2 SCNGCRILRKGCSEDCILRQSLqsidnPQSQANATVFVAKFFGRAGLMSFISSVPQNQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNWHICQAA 97 6*************************99******************************************************************99 PP DUF260 92 aela 95 + ++ Jcr4S02856.10 98 VMTV 101 7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.277 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-25 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSCNGCRILR KGCSEDCILR QSLQSIDNPQ SQANATVFVA KFFGRAGLMS FISSVPQNQR 60 PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WHICQAAVMT VLRGGTIEPV LEFEGGILAP 120 DYGNLSECAS FSPKANVDSV SKATATLKRT RSDFDKEEAK CGLTSNLDLC LMYSEEKPRA 180 VSSSEESETT TLGSSGTYCR SSLQGGERKL LTLFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012093105.1 | 1e-158 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 5e-63 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A067LJK7 | 1e-156 | A0A067LJK7_JATCU; Uncharacterized protein | ||||
STRING | XP_002527499.1 | 1e-102 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 6e-62 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Entrez Gene | 105650765 |
Publications ? help Back to Top | |||
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