PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02591.30 | ||||||||
Common Name | JCGZ_00754, LOC105632848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49331.9 Da PI: 6.6325 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.3e-06 | 336 | 374 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Jcr4S02591.30 336 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 374 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.944 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0027 | 331 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 335 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.89E-7 | 335 | 379 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-9 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MADEYNTSTN WWDNSSRNRF DSGSSSSSSV LNSTLNSFAW PSEMVDVKTR SSVESASVSD 60 SSIVFHDHTH KLNQQQPQDS SSDLHMMGLG LSSQPIDWNQ ALLRGGDNKT ENSFRSMLQE 120 NYQQEWRERV FSTGSESAIN EYKQISSRGF SLDHQPQFSP HGGSSSDSTV TCQGLQSSGF 180 QMDYGSPSTM LQGLLLSPDN HHQQQQQTQS SLSYQYGSSA TNYGISSNEL VPSWSKVTNF 240 LRNSPPKQSP HSQLHFSNNA PFWNASASNS MTDVRSNFFS SSLQPQFPVS NFEEKPKNIS 300 EVRDSSSTVV KKSGSEAPTT KRPRNETQSP VPAFKVRKEK MGDRITALQQ LVSPFGKTDT 360 ASVLSEAIEY IKFLHEQVSV LSTPYMKGGA PIHNHQQVSD KDPDGQKQDL RSRGLCLVPV 420 SSTFPVTHET TVDFWTPTFG GTYR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070694.1 | 0.0 | transcription factor bHLH123 | ||||
Swissprot | Q8GXT3 | 7e-96 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A067KS86 | 0.0 | A0A067KS86_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_007585m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105632848 |
Publications ? help Back to Top | |||
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