PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02553.40 | ||||||||
Common Name | JCGZ_01344, LOC105646817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 326aa MW: 35908.4 Da PI: 7.9401 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 8 | 49 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ Jcr4S02553.40 8 WADEEDRIIISAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 49 99*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.979 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 4 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.32E-15 | 6 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 7 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-14 | 8 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.53E-13 | 8 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MLWMYVHWAD EEDRIIISAH AIHGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRCIDQGRL 60 KPGPSDATKD GSRDKTKASS EETPSVGTVN SLRPLEGRRF PIDDQPSQQE DQVQKDNISQ 120 LNASRFVSEP QVHPTLPRPK ARVSAFSVYS PPSGPKIGCV HSRSNPTQGP LVQASRTDVG 180 LHKFLKDINV DPVVPLRCGY GCCSMPSGNH PPRSLLGPEF VEYEELPSFS SQELVSIATD 240 LNNIAWIKSG LENSSSGIPS TAASYRMSQG ASVGSQMVMS SEQNLRNSHM AYEEGRNKLM 300 GMMTDTLSTQ MPAQPFAMRP EVESLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mbj_A | 3e-18 | 8 | 53 | 6 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 3e-18 | 8 | 53 | 6 | 51 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034628 | 0.0 | KM034628.1 Jatropha curcas clone JcMYB007 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088150.1 | 0.0 | transcription factor MYB25 | ||||
TrEMBL | A0A067LKI8 | 0.0 | A0A067LKI8_JATCU; MYB family protein | ||||
STRING | cassava4.1_008330m | 1e-161 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 8e-61 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Entrez Gene | 105646817 |
Publications ? help Back to Top | |||
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