PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02435.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | CPP | ||||||||
Protein Properties | Length: 416aa MW: 46031.1 Da PI: 6.4121 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.9 | 6.2e-16 | 110 | 148 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+kgC+Ckks+C+kkYCeCf+a+ Cse+CkC +CkN e Jcr4S02435.50 110 EQKGCHCKKSNCIKKYCECFQANIRCSENCKCVKCKNLE 148 68***********************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 0.15 | 14 | 66 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 23.539 | 15 | 149 | IPR005172 | CRC domain |
SMART | SM01114 | 1.3E-16 | 109 | 150 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.1E-12 | 111 | 147 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MPRLRARIIS GAPMIRRRCH CKQSKCIQLC PEVVASAYEN GTVNALLLEH SCDGCGCSAC 60 HNNIENEAIR KSTIESILKR TGKAFKPKIA SSSQTDGDNA KTVPIMLVGE QKGCHCKKSN 120 CIKKYCECFQ ANIRCSENCK CVKCKNLEVN EQRTAHSWGE YDNSKASVEE TNAATFAAIG 180 SSGYSFSQET RKRKYQEILD SDKKEQEIQD IKQDQQENPV TVSGSFPTFS VTPAHCILSS 240 TVLGSSKFAY RSLLADVVQP LDTRELCSFL VVASKAAKIL PDMQEAKENQ IATIPADQNG 300 KNQEKEPDDQ KVTSDNNLST GNQTDTLDVE VSRSDGTNVQ EGRLFLSQRD ELMCDEEEIL 360 FHGPASPEEI LNHGFTADFY GEMERLALTC LHDCLAKLIT FGGVKGKVFR LIMNVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-14 | 64 | 153 | 47 | 127 | Protein lin-54 homolog |
5fd3_B | 2e-14 | 64 | 153 | 47 | 127 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020535326.1 | 0.0 | protein tesmin/TSO1-like CXC 6 isoform X3 | ||||
Refseq | XP_020535327.1 | 0.0 | protein tesmin/TSO1-like CXC 6 isoform X3 | ||||
TrEMBL | A0A067KMD5 | 0.0 | A0A067KMD5_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22559 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-74 | Tesmin/TSO1-like CXC domain-containing protein |