PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02384.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 618aa    MW: 68082.7 Da    PI: 7.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02384.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.00017281298219
                    HHHHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsa 19 
                    r +h++ E+rRR++iN++
  Jcr4S02384.70 281 RSKHSATEQRRRSKINDR 298
                    889*************96 PP
2HLH22.42.3e-073113422055
                    HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  Jcr4S02384.70 311 FQMLRELIPHG----DQKRDKASFLLEVIEYIQFLQ 342
                    899*******7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-21276366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14279370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.614279341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-13281346No hitNo description
SMARTSM003537.5E-6285347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-4311342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MELPQQQRLF ESEGRKPTHD FLSLYSHSTV QQDPRPPSQV GHEGDVSHDS HQGFRAGYLK  60
THDFLQPLER VGKTTATKEE TGIEISSLER PPPPAPPPSV EHILPGGIGT YSISHISNYF  120
NQRIPKPEGS TMFSVAQASS TDKNDEHSNC SSYTGSGFSL WEESQLKKGK TGKENEGERS  180
NTVREAAATA GHWTSSERPS QSSTNNHRNS FSPLSSSQPS GQKSHSFMEM IKSAKGSTQD  240
DNLDDEEEFV LKKESSSPVH KGELRVKVDG KSTDQKANTP RSKHSATEQR RRSKINDRQV  300
SYQLLVCFPL FQMLRELIPH GDQKRDKASF LLEVIEYIQF LQEKVQKYEG SYQGWNHEPA  360
KLVPWVKFCS PSCISVWPTE SYADQSQGIN GGAGPSILFA SKLDEKNNTL STTIPGCAQN  420
PVESDINSVS TFKPTDHHPG ITNSAIPFPM SLQPNFFNSG RSGGIVNQLP PRMVSDAENI  480
ANQPQPQSHN TRLCTSDGAV AADKLKEQEL SIEGGTINIS SVYSQGLFLG HKNRIELICH  540
RLLNTLTQAL QSSGVDLSLA SISVQIQLGK RANRRPILPT SIVKDNEVPC SNQGTTRPRV  600
SDGEESGQAL KKLKTSKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080442.10.0transcription factor BIM1 isoform X2
TrEMBLA0A067KHS20.0A0A067KHS2_JATCU; Uncharacterized protein
STRINGXP_002514597.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-116bHLH family protein