PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02291.30

Common Name

JCGZ_15797, LOC105630621

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 1285aa MW: 142855 Da PI: 5.0798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02291.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.3e-06	455	478	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC++C++ F ++nL +H+ + H Jcr4S02291.30 455 YKCHKCTMAFDEPDNLLQHLLSsH 478 9*******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	9.858	321	401	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.98E-8	326	380	IPR016177	DNA-binding domain
Pfam	PF01429	7.5E-6	329	373	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	3.2E-4	330	407	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.017	455	478	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.536	455	483	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	457	478	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.2	502	524	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.642	502	529	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	504	524	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1285 aa Download sequence Send to blast
MASASASASF DSSASNHHRN LNHLPTESLP LIDLNLLSQS ELLSLSLCCS SSSSVHHYQN 60 DTDVATPKID RSIFNESAGS RKQTFSRLRL AHRNNPQFSP SPSIRTPGPY QTTEQVLDEE 120 DSQIISLLKS LFGANLDNND NDINLVSVPI QYNESLEFLD FPSTRNEPLQ NVPITSFADY 180 SGESEIKQSI GIANADSTTT KKRKRGRPRK NESNFYGNNN NNNNLNYPIE NESKQIETKT 240 IVVDDNLSME MEKEKPKEKG EVVMMDSNGM AVDFVALAGV EDPFWEELSR RTMGMHTEDQ 300 LLGFLQGLEG EWVSNRRKKK IVNASLLGNV LPSGWKLMLC IKKKAGYFWI ACRRYISPNG 360 QQFMSCKEVS SYLLSLYGLQ DANQSNFGHI DGNFQLTDRI SSENAADVTL KVDKTGDDIA 420 CCLALPVTSK SVEHENQASS VNEGIPEQVQ SVGKYKCHKC TMAFDEPDNL LQHLLSSHQR 480 APKRLRHAMA MNEEVIIKNG KYECQFCHKP FEERHRYNGH LGNHIKDYFK RIEASGGAMT 540 IQRSTVPQSV GTYHDVLKIQ ESIRINMGSI AINSDIKTKD VISSAFLEGK EKENTTVKSC 600 CDKQDMFYSM NNDKEDKVTE VNDVIAVEIN VFPGAESASL YNENDSIPKP SGETNFSQCA 660 TDTINTFGAQ EEGSLPAVGR DRTFAVDNNE DQVCTSLKED HSQERGSDSC SLSLNSVEKE 720 VDGTKDISVS STINGMKIDE KVFLGKEKLR TGFSNDCLAK EDVANNIKEQ RSCEGSFGLF 780 HLFPMIRCNQ VFTSTVNKSK FDKSVMSRNS AQKICLESNN MLAMEDPGIL SELENISGSH 840 SVVPSWKEQM CSFGNNASGT SICTRKKHCQ ENESEVIQLN LFGSENITMK VSNATMAVPN 900 QNKVPLSKNS ECCEDVDVVA GHATDIDLER TCNNLPVRSS NELTFASKDG GVLNGTSKNL 960 MQDRISESSL HEPSCDGHAH DNENSMNKVS YIIMDQHKHK QFKSSCDVGP NIAFDNSHTE 1020 QHVDVVKSTT QESCSKDSSL VISGNQQKFD VEDNLTGLYT STLNEQKSPA KNLLSLSKSE 1080 QVWSVENNSS RDLTGRVQEE SALDYLNPRE KESLMGFSTY AQNENALSGF MWRTDEQNDP 1140 LSSFADTSSQ LVHSSSYFPT YDVMSDKGES ELFGEKFNGT TGFDGVRSSG MENMEYNFMT 1200 SHSVGSKVFS YNAEITQGLD SSVWLEKEAL PLLPKIASKR HTPALCVWCR NEFHYEALES 1260 EAQIGSMGFT CATCKAKFSG QFNLM

Sequence ? help Back to Top

Protein Sequence Length: 1285 aa Download sequence Send to blast

MASASASASF DSSASNHHRN LNHLPTESLP LIDLNLLSQS ELLSLSLCCS SSSSVHHYQN  60
DTDVATPKID RSIFNESAGS RKQTFSRLRL AHRNNPQFSP SPSIRTPGPY QTTEQVLDEE  120
DSQIISLLKS LFGANLDNND NDINLVSVPI QYNESLEFLD FPSTRNEPLQ NVPITSFADY  180
SGESEIKQSI GIANADSTTT KKRKRGRPRK NESNFYGNNN NNNNLNYPIE NESKQIETKT  240
IVVDDNLSME MEKEKPKEKG EVVMMDSNGM AVDFVALAGV EDPFWEELSR RTMGMHTEDQ  300
LLGFLQGLEG EWVSNRRKKK IVNASLLGNV LPSGWKLMLC IKKKAGYFWI ACRRYISPNG  360
QQFMSCKEVS SYLLSLYGLQ DANQSNFGHI DGNFQLTDRI SSENAADVTL KVDKTGDDIA  420
CCLALPVTSK SVEHENQASS VNEGIPEQVQ SVGKYKCHKC TMAFDEPDNL LQHLLSSHQR  480
APKRLRHAMA MNEEVIIKNG KYECQFCHKP FEERHRYNGH LGNHIKDYFK RIEASGGAMT  540
IQRSTVPQSV GTYHDVLKIQ ESIRINMGSI AINSDIKTKD VISSAFLEGK EKENTTVKSC  600
CDKQDMFYSM NNDKEDKVTE VNDVIAVEIN VFPGAESASL YNENDSIPKP SGETNFSQCA  660
TDTINTFGAQ EEGSLPAVGR DRTFAVDNNE DQVCTSLKED HSQERGSDSC SLSLNSVEKE  720
VDGTKDISVS STINGMKIDE KVFLGKEKLR TGFSNDCLAK EDVANNIKEQ RSCEGSFGLF  780
HLFPMIRCNQ VFTSTVNKSK FDKSVMSRNS AQKICLESNN MLAMEDPGIL SELENISGSH  840
SVVPSWKEQM CSFGNNASGT SICTRKKHCQ ENESEVIQLN LFGSENITMK VSNATMAVPN  900
QNKVPLSKNS ECCEDVDVVA GHATDIDLER TCNNLPVRSS NELTFASKDG GVLNGTSKNL  960
MQDRISESSL HEPSCDGHAH DNENSMNKVS YIIMDQHKHK QFKSSCDVGP NIAFDNSHTE  1020
QHVDVVKSTT QESCSKDSSL VISGNQQKFD VEDNLTGLYT STLNEQKSPA KNLLSLSKSE  1080
QVWSVENNSS RDLTGRVQEE SALDYLNPRE KESLMGFSTY AQNENALSGF MWRTDEQNDP  1140
LSSFADTSSQ LVHSSSYFPT YDVMSDKGES ELFGEKFNGT TGFDGVRSSG MENMEYNFMT  1200
SHSVGSKVFS YNAEITQGLD SSVWLEKEAL PLLPKIASKR HTPALCVWCR NEFHYEALES  1260
EAQIGSMGFT CATCKAKFSG QFNLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF290468	1e-116	KF290468.1 Jatropha curcas clone pJcSSR2714 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067883.1	0.0	uncharacterized protein LOC105630621
TrEMBL	A0A067LA57	0.0	A0A067LA57_JATCU; Uncharacterized protein
STRING	cassava4.1_000391m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19

Link Out ? help Back to Top
Entrez Gene	105630621

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]