PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02092.20
Common NameJCGZ_23330, LOC105647521
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 452aa    MW: 49318.4 Da    PI: 9.8019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02092.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0584106123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  Jcr4S02092.20  84 FVCEICNKGFQRDQNLQLHRRGH 106
                    89*******************88 PP
2zf-C2H212.30.00052160182123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  Jcr4S02092.20 160 WKCDKCSKKYAVQSDWKAHSKTC 182
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.65E-783106No hitNo description
Gene3DG3DSA:3.30.160.601.5E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
PfamPF121717.1E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355220125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.65E-7155180No hitNo description
SMARTSM00355150160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSNITGEGGS FSSGNNNTAG VGEVEVPHFN SIASSTTTTI TTTNSNGSAA QQPVKKKRNL  60
PGNPDPSAEV IALSPNTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSTEI  120
RKRVYVCPEP SCVHHNPARA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDWKAHSK  180
TCGTKEYKCD CGTIFSSNED QSTLLSPNFN HIDPKIPLSL PHELTPLPPK PSSATLFGGA  240
RNLIMANNTS PSSLQLNANS SSTSFEGNGN LLAAGFASMS ATALLQKAAQ MGVTTASTNL  300
NSPTMNTHKS FVTSTSMAPS TFDDDDRVTR GNDGGYLMVA NDLGMFNGVL EQNSALFKNI  360
QQENSNNKNN NSHIRSGLSR FSGDVMTTVD FLGVGGSRQR SIFQEHQKQE MDQFRGMAHQ  420
RMQGLGHFEQ QASALEKPIV GYLKKIKLIQ NI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-21156199346Zinc finger protein JACKDAW
5b3h_F5e-21156199346Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089034.10.0protein indeterminate-domain 2
TrEMBLA0A067JHZ30.0A0A067JHZ3_JATCU; Uncharacterized protein
STRINGcassava4.1_005941m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-87C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]