PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01542.20 | ||||||||
Common Name | JCGZ_07105, LOC105637574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ARR-B | ||||||||
Protein Properties | Length: 689aa MW: 75727 Da PI: 6.2374 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78 | 1.2e-24 | 195 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLG.....Gse.kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qLG G + +A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Jcr4S01542.20 195 KPRVVWSVELHRKFVAAVNQLGidiflGVDaEAVPKKILDLMNVEKLTRENVASHLQKYRL 255 79******************976666655438****************************8 PP | |||||||
2 | Response_reg | 78.3 | 2.6e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl vdD+p+ + ll+++l++ +y +v+++ ++ +alell++++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + ++ Ga Jcr4S01542.20 20 VLAVDDDPTCLLLLETLLRRCQY-HVTVTNQAVSALELLRANKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGISHGA 113 799********************.***************777777*******************87754.558*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +eel + Jcr4S01542.20 114 CDYLLKPVRMEELKN 128 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.8E-159 | 1 | 680 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.42E-36 | 17 | 145 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.4E-42 | 17 | 158 | No hit | No description |
SMART | SM00448 | 7.1E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.356 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.12E-24 | 21 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 192 | 260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-16 | 192 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-21 | 195 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-6 | 197 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MTVEQGIGEA KDQFPIGMRV LAVDDDPTCL LLLETLLRRC QYHVTVTNQA VSALELLRAN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIS HGACDYLLKP 120 VRMEELKNIW QHVIRRKFDN KDRNNFDNQD RTQYGNGEAT TDQKINKKRK DQNEDEDDDR 180 DENGHENEDP TTQKKPRVVW SVELHRKFVA AVNQLGIDIF LGVDAEAVPK KILDLMNVEK 240 LTRENVASHL QKYRLYLKRI STVANQQANM VAALGSTDAS YLQIGSANGL GFHNLAGTGQ 300 FHNATFRSLP PSGMLGRLNS SAALGMRGLP SPGVIQLGHL QTTGHLNNSQ GHFQPIGHAG 360 NDGTVLQGMP MALELDQIQA NKGVAYIREL PTDINNTGAF SVSNGFPDTK TMAGSSNNPF 420 LGVSNKPLML EGNAQGAQDV QKFVKQTSLS VTSLDSGIST HFPDNRTCND SWSNAVQSTG 480 VQSNSFSLND CFKQSTLHPN NIRDRMSTTA LQSANNPDVS SISTLPIDLH DSKLDLQCQV 540 TSIRNNSGQI INNAPQGWDD QRQDATFQTN AVCSSVNSGV PIPGVAIPMG QNFDPNNAIF 600 HRTTSFNSER QSNFIDSSLM KHNEVENLAM ETLIRSNEGY GVGQQKPQGS YVSNNFGSLE 660 DLASVMVKQL NCSMKESAIC LCSRNKPTW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-24 | 191 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076456.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | A2X1N2 | 1e-138 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A067KNZ8 | 0.0 | A0A067KNZ8_JATCU; Two-component response regulator | ||||
STRING | XP_002515447.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-122 | response regulator 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637574 |
Publications ? help Back to Top | |||
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