PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01323.60
Common NameJCGZ_16126, LOC105630945
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 361aa    MW: 40449.5 Da    PI: 7.9388
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01323.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.1e-36251172103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  Jcr4S01323.60  25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  Jcr4S01323.60 112 HRRKTA 117
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.74E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAINHHHHHH PHSQLGVNGP SFFPFSSRVS ISPSESDEQH NNNNWCDSPP LSSPRGGVAN  180
AAVINGSGYN SSVTALSEDN ERLRRSNNML MSELAHMRKL YNDIIYFVQN HVKPVTPSNS  240
YPSSLLLCAP TSTTANPFAS NGSLVQKPLN QLLGYYPPSN TKQVPQVQVL NSPSNTSQSS  300
LTILEEPNNG CKTKLFGVPL QSKKRLHPEY ASNTGTMEAN KARLVLEKDD LGLNLMPPST  360
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068333.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-121HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE10.0A0A067LCE1_JATCU; Uncharacterized protein
STRINGcassava4.1_010465m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-121heat shock transcription factor B4
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]