PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01086.20
Common NameJCGZ_04963, LOC105633393
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 148aa    MW: 17126.9 Da    PI: 10.3657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01086.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.3e-12511193296
                    --SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
             B3  32 esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                     + ++t  d++g++W+++l++rk+ +    ++  + W  Fvk  gL+ gD v+F+++++   ++  ++ 
  Jcr4S01086.20  51 LKEKITSFDQDGKEWTFRLSIRKTEKYpkpTLTPASWHPFVKHFGLRGGDAVIFYVIRNdGARKIQIRG 119
                    33478999***********996555555558888*********************99986777555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1117112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-818118No hitNo description
SuperFamilySSF1019369.29E-1120111IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-851117IPR003340B3 DNA binding domain
PROSITE profilePS508639.27759121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MANPKLDPEI KSNSIDILCE KLLKKTDLGH QFIAPSDLLK KPEVFYETGK LKEKITSFDQ  60
DGKEWTFRLS IRKTEKYPKP TLTPASWHPF VKHFGLRGGD AVIFYVIRND GARKIQIRGL  120
RKIIFLGKPT WEEVKKVENQ ASTSHYRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664346.15e-37uncharacterized protein LOC110653034
TrEMBLA0A067KRH61e-105A0A067KRH6_JATCU; Uncharacterized protein
STRINGcassava4.1_030218m2e-39(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]