PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01067.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 1229aa MW: 138067 Da PI: 8.4194

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01067.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.8e-08	46	80	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE e++++a +++G + W+++a + R+ ++ Jcr4S01067.30 46 QWSKEELERFYRAYRKHGQD-WEKVAVAVH-DRSVEM 80 6***************99.***9998.888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.13E-9	42	92	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	46	81	IPR009057	Homeodomain-like
CDD	cd00167	3.20E-5	47	81	No hit	No description
Pfam	PF06584	2.6E-32	624	724	IPR033471	DIRP domain
SMART	SM01135	1.0E-58	624	725	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1229 aa Download sequence Send to blast
MAPSRKSRSV NKQFSYVNEV SSNKNVENAS KNRQKKRKLS DMLGPQWSKE ELERFYRAYR 60 KHGQDWEKVA VAVHDRSVEM VETLYTMNKA YLSLPRGYAS AAGLIAMMTD HYNNLEDSDS 120 EQETNRPIVS PRKPQKRARG MKELDMSPVP QLVQSQPAVT GCLSLLKKRR SGTRPWAVGK 180 RTPRVPVSYS LDKDSGEKYI SPIRQGLKFK TDALDDDVAH EIALVLTEAS QRAGSPQVSQ 240 TPNRKIDTPS PARNGEHMHT ESEMTSTKFR GSEMDEDGCE LSLGSTEADI GHYTRDKCLL 300 KGKRYQGKKP ASEENADNHL DDVKEACSGT EEGQKLGAVK GKLEMEVVGA KFSRSNKGPR 360 KRSKKVLFGE GEADAFDALQ ALADLSLRLP EAPVDTESSV HVEEQKTGNV AKSKLKGIRS 420 SSGVKVASSK TTKQGKVFPH DVSTAPDVKD GAHQISVGIR KRRKKSSPSK YIVCKLQILE 480 NEELIDSHQD ESHKVEATED VNDLIKKAKC SHDTAYQKQG KLTKPSEFTS SMDHGRESND 540 SAPTSVQVLS SNQFNLPTKV RSRRKIKTPK PLIDKDSPSP ENVVIGQHII PIPSFKDGAL 600 RLKKKLSSCL SRYQVRRWCV FEWFYSAIDY PWFAKREFVE YLDHVGLGHI PRLTRVEWGV 660 IRSSLGKPRR FSEQFLKEEK EKLNQYRESV RKHYTELHAG TRDGLPTDLA RPLAVGQRII 720 ALHPKTREIH DGSVLTVDHN RCRVQFDQPE LGVEFVKDVD CMPLNPSDNM PASLNRHNVV 780 LNKFIENLND LKMNGHPIER KMEGLHKNLQ HVKIWRIPMV FHIVPRQLIT SAIHYSMISL 840 HYNSVALCFV KSSLFREEWG MPVICPRELL EYLLKDIYRP SIKILNLKWI YVKEADCSLQ 900 ICFYFANSNT QVNNESGETV IVQPTVNAQP FILAHIQAKE ADIQALSELT CALDKKEAVV 960 SELKRMNDEV ENQKDGENSL KDSELFKKHY AAVLFQLNEI NEQVSSALFC LRQRNTYQGS 1020 SQQMWLKPMT SVGEPVGHCS VFDYSADETQ ESGSHVAEIL ESSRAKAQTM VDAAMQAMTS 1080 LKEGSVVENI EEAIDFVNNQ LQVNDLSSPA MRSSTTTNLV QSNLASQDQS SSCAANVGAN 1140 YHAPDADSDH MSDQNATQIP TELITKCVAT LLMIQKCTER QFPPSEVAEA LDSAVTSLKP 1200 CCSQNLPIYA DIQKYMGIIR NQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1229 aa Download sequence Send to blast

MAPSRKSRSV NKQFSYVNEV SSNKNVENAS KNRQKKRKLS DMLGPQWSKE ELERFYRAYR  60
KHGQDWEKVA VAVHDRSVEM VETLYTMNKA YLSLPRGYAS AAGLIAMMTD HYNNLEDSDS  120
EQETNRPIVS PRKPQKRARG MKELDMSPVP QLVQSQPAVT GCLSLLKKRR SGTRPWAVGK  180
RTPRVPVSYS LDKDSGEKYI SPIRQGLKFK TDALDDDVAH EIALVLTEAS QRAGSPQVSQ  240
TPNRKIDTPS PARNGEHMHT ESEMTSTKFR GSEMDEDGCE LSLGSTEADI GHYTRDKCLL  300
KGKRYQGKKP ASEENADNHL DDVKEACSGT EEGQKLGAVK GKLEMEVVGA KFSRSNKGPR  360
KRSKKVLFGE GEADAFDALQ ALADLSLRLP EAPVDTESSV HVEEQKTGNV AKSKLKGIRS  420
SSGVKVASSK TTKQGKVFPH DVSTAPDVKD GAHQISVGIR KRRKKSSPSK YIVCKLQILE  480
NEELIDSHQD ESHKVEATED VNDLIKKAKC SHDTAYQKQG KLTKPSEFTS SMDHGRESND  540
SAPTSVQVLS SNQFNLPTKV RSRRKIKTPK PLIDKDSPSP ENVVIGQHII PIPSFKDGAL  600
RLKKKLSSCL SRYQVRRWCV FEWFYSAIDY PWFAKREFVE YLDHVGLGHI PRLTRVEWGV  660
IRSSLGKPRR FSEQFLKEEK EKLNQYRESV RKHYTELHAG TRDGLPTDLA RPLAVGQRII  720
ALHPKTREIH DGSVLTVDHN RCRVQFDQPE LGVEFVKDVD CMPLNPSDNM PASLNRHNVV  780
LNKFIENLND LKMNGHPIER KMEGLHKNLQ HVKIWRIPMV FHIVPRQLIT SAIHYSMISL  840
HYNSVALCFV KSSLFREEWG MPVICPRELL EYLLKDIYRP SIKILNLKWI YVKEADCSLQ  900
ICFYFANSNT QVNNESGETV IVQPTVNAQP FILAHIQAKE ADIQALSELT CALDKKEAVV  960
SELKRMNDEV ENQKDGENSL KDSELFKKHY AAVLFQLNEI NEQVSSALFC LRQRNTYQGS  1020
SQQMWLKPMT SVGEPVGHCS VFDYSADETQ ESGSHVAEIL ESSRAKAQTM VDAAMQAMTS  1080
LKEGSVVENI EEAIDFVNNQ LQVNDLSSPA MRSSTTTNLV QSNLASQDQS SSCAANVGAN  1140
YHAPDADSDH MSDQNATQIP TELITKCVAT LLMIQKCTER QFPPSEVAEA LDSAVTSLKP  1200
CCSQNLPIYA DIQKYMGIIR NQILALIPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM437233	3e-43	AM437233.2 Vitis vinifera contig VV78X223624.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069374.1	0.0	protein ALWAYS EARLY 3 isoform X3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A067KV21	0.0	A0A067KV21_JATCU; Uncharacterized protein
STRING	cassava4.1_000519m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]