PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01019.40
Common NameJCGZ_15839, LOC105630661
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 338aa    MW: 37547.1 Da    PI: 6.2894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01019.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13136187155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Jcr4S01019.40 136 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 187
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.44E-14134191No hitNo description
PROSITE profilePS5088815.459135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17135204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-14136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEAVVYPQ DPFGYVYKDC YSTGGAWVGY PNGFDDFQEN QDIAFLGILD NGNNIGQQSL  60
QANWDSSSSP SMIHRHAKEW DPNSSSPETC AVDQPFPPTS AGVLHHPSLE TPAATTGRRK  120
RRRTKSTKNK EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPSYVQRG DQASIIGGAI  180
NFVKELEQLL QTMEAHKKSK QQQTAAADVN ALSSPFAEFF TFPQYSTRAS PATAEESVAD  240
QNQWAAAVAD IEVTMVESHA NLKILSKKRP RQLLKMVAGL QGLRLSVLHL NVTAVDQLVL  300
YSVSVKVEEG CHLNTVDEIA AAVNQMLHTF HEEESAFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122RKRRR
2118123RKRRRT
3136147RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067935.10.0transcription factor bHLH96
SwissprotQ9C7T42e-95BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067KZ330.0A0A067KZ33_JATCU; Uncharacterized protein
STRINGXP_002513985.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]