PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00982.160 | ||||||||
Common Name | JCGZ_18924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28548.4 Da PI: 8.0664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.8e-21 | 94 | 143 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++ge Jcr4S00982.160 94 YRGIRRRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRGE 143 9*******.**********72....35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 93 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.65E-33 | 93 | 149 | No hit | No description |
SMART | SM00380 | 8.9E-37 | 93 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 93 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 93 | 151 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-15 | 94 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCGGAIISDF VAVKRSRRLN AEDLWSELDT FSDFLGLDYP NNGNKEVLPS HFDLELPQKP 60 NQLNEVEKIT EKASHSQGDV KEGNKTKRTR KNIYRGIRRR PWGKWAAEIR DPHKGVRVWL 120 GTYNTAEEAA RAYDEAAKRI RGEKAKLNFG QSPPLAPALV PPYKKRCLIN PGMATASYQM 180 TAPPPEPYAS LGYQKEMASD YKLKEQISSL EMFLGLEPEE MAAQLSCEGF NSVDLWMLGD 240 LVSHHQNHGL LPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 94 | 149 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 100 | KRTRKNIYRGIRRRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022002 | 0.0 | KF022002.1 Jatropha curcas APETALA2-ethylene-responsive element binding protein 1 (AP2-EREBP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295729.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A067K7Q3 | 0.0 | A0A067K7Q3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_013880m | 1e-118 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-48 | ethylene-responsive element binding protein |
Publications ? help Back to Top | |||
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