PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00812.20

Common Name

JCGZ_12318

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 520aa MW: 56053.8 Da PI: 8.4225

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00812.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.2	6.3e-37	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny sqPr+fCk+CrryWt+GG+lr++PvGg +rkn k+s Jcr4S00812.20 26 QEHLPCPRCDSTNTKFCYYNNYIFSQPRHFCKSCRRYWTHGGTLRDIPVGGDTRKNAKRS 85 68899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	26	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-32	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.304	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:3.20.20.80	1.7E-75	216	520	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF00332	2.1E-65	216	520	IPR000490	Glycoside hydrolase family 17
SuperFamily	SSF51445	1.44E-56	216	520	IPR017853	Glycoside hydrolase superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MPSDSSSTAT RRLTKPHNTG APPADQEHLP CPRCDSTNTK FCYYNNYIFS QPRHFCKSCR 60 RYWTHGGTLR DIPVGGDTRK NAKRSRTSSS GFTVVGPMTA TTGNHNLPLP ATPVLVPLMA 120 NQATSIQFGC GGGDGKGNVS GSSGNSTVSG SFTSLLNTQG PGFLALSGFG LGLGSAFEYM 180 GFGLARGVWP FPGVGDGGAG GVGGNGGSAG GMRAEIGVTF SRLADNFPPA QVAVKFAESK 240 GFKRIRLYKP HHDALQALKG QGIQVILGVG DDEVEAVSKS AAPKWVKDNV VPYANQITII 300 AIAIGHDLIP NSKLAVYVLP ALQAMKEALE DHGLTLISVT TPFTLNTLLT HFPPSHSTFD 360 PQKIYLIKPI INFLATHSPL LLCDIYPYEA YLMDSHLVSL DYALLNKTNV EVLDGPFEYT 420 NMLDGLVDAF YSAIEKLEAG TVKIVVSETG WPFSEKIYAS AQYARAYASN VFKRGQANTG 480 TPKKPFWALD VFEYNLFFQN DAPLDKKPYA LFYPNMSAMY

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MPSDSSSTAT RRLTKPHNTG APPADQEHLP CPRCDSTNTK FCYYNNYIFS QPRHFCKSCR  60
RYWTHGGTLR DIPVGGDTRK NAKRSRTSSS GFTVVGPMTA TTGNHNLPLP ATPVLVPLMA  120
NQATSIQFGC GGGDGKGNVS GSSGNSTVSG SFTSLLNTQG PGFLALSGFG LGLGSAFEYM  180
GFGLARGVWP FPGVGDGGAG GVGGNGGSAG GMRAEIGVTF SRLADNFPPA QVAVKFAESK  240
GFKRIRLYKP HHDALQALKG QGIQVILGVG DDEVEAVSKS AAPKWVKDNV VPYANQITII  300
AIAIGHDLIP NSKLAVYVLP ALQAMKEALE DHGLTLISVT TPFTLNTLLT HFPPSHSTFD  360
PQKIYLIKPI INFLATHSPL LLCDIYPYEA YLMDSHLVSL DYALLNKTNV EVLDGPFEYT  420
NMLDGLVDAF YSAIEKLEAG TVKIVVSETG WPFSEKIYAS AQYARAYASN VFKRGQANTG  480
TPKKPFWALD VFEYNLFFQN DAPLDKKPYA LFYPNMSAMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cyg_A	7e-56	216	520	1	308	beta-1, 3-glucananse
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022024	0.0	KF022024.1 Jatropha curcas DNA binding with one finger 2 (Dof2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079558.1	0.0	glucan endo-1,3-beta-glucosidase
TrEMBL	A0A067K6X4	0.0	A0A067K6X4_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-39	Dof family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]