PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00715.40 | ||||||||
Common Name | JCGZ_18952, LOC105643496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ARR-B | ||||||||
Protein Properties | Length: 680aa MW: 74152.2 Da PI: 5.8605 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8.2e-29 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Jcr4S00715.40 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.9 | 1.8e-26 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+vdD+p+ +++l+++l+ y +v+ ++ +e+al +l+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + ++ + + + Ga Jcr4S00715.40 35 VLVVDDDPTCLMILEKMLKTCLY-KVTKCTRAEQALSMLRENKngYDIVISDVHMPDMDGFKLLEYIGLEM-DLPVIMMSADDGKNVVMKGVTHGA 128 89*********************.***************999999**********************6654.8*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +e+l + Jcr4S00715.40 129 CDYLIKPVRIEALKN 143 ***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-181 | 9 | 671 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 4.7E-35 | 32 | 156 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-42 | 32 | 175 | No hit | No description |
SMART | SM00448 | 3.6E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.436 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.20E-27 | 36 | 148 | No hit | No description |
PROSITE profile | PS51294 | 11.048 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.7E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-8 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MNLSNGKGSM STASSSVAWK AGDVVSDQFP IGLRVLVVDD DPTCLMILEK MLKTCLYKVT 60 KCTRAEQALS MLRENKNGYD IVISDVHMPD MDGFKLLEYI GLEMDLPVIM MSADDGKNVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKKNEMKDLE QSGSVEEGDR QQRQSEDADY 180 SSSVNEGNWR NSKKRKDEED EADERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNN LSNPFISPQE ATYGPLSSLN 300 GLDLQTLAAT GQIPAQSLAT LQAAGLGRSA VKARMPMPIV DQRNLFSFEN PKLRFGDGQQ 360 QQLNSGKQMN LLHGIPTTME PKQLANLHHS AQSLGNMNIQ VNNHGGQSNS LLMQMSQSQS 420 RGQILNETTG CLVSTLPSSA GQPVISNTIA GGVLARNGLA ENGRGTGYNP VSQSPSMLNF 480 PLNNTAELSG SSFPLGNSPG ISSLTSKGAF QEDVNSEIKG SVGFIPSYDI FSDLNQHKSH 540 DWELQNVGMT FIASHQTNSL ESNLDVGPSV LSHQGFSSSQ GSAQNRNISA VGKPMFSAGD 600 ATDHVNPQSV GQHVNNFFAD NSVRIKSETV PDANCQAGLF PDQFGQEDLM SALLKQQQGS 660 VGPTENEFDF DGYPMDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 212 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084014.1 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A067JVF9 | 0.0 | A0A067JVF9_JATCU; Two-component response regulator | ||||
STRING | XP_002519174.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105643496 |